View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11457_low_14 (Length: 310)
Name: NF11457_low_14
Description: NF11457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11457_low_14 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 300
Target Start/End: Original strand, 26121282 - 26121583
Alignment:
| Q |
7 |
gatgagagcaaagaaacttggtgatgctgccaagaggactatagaggaaggtggagattcttacaacaacttgattcagttgattgatgagctgaaatca |
106 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26121282 |
gatgagagcaaagaaacttggtgaggctgccaagaggattatagaggaacgtggacattcttacaacaacttgattcagttgattgatgagctgaaatca |
26121381 |
T |
|
| Q |
107 |
ttgaagaaatctaaagcacttgatgagaaag-tgattagataagtcaaatgaaggagtaatgtttgatgcatcaggaggtgtatctgatgaaggctttca |
205 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26121382 |
ttgaagaaatctaaagcacttggtgagaaagcagattagataagtcaaatgaaggagtaatgtttgatgcttcaggaggtgtatctgatgaaggctttca |
26121481 |
T |
|
| Q |
206 |
ataagatgaaagaacatccaannnnnnnncctgcttttgtttagct------tggagtccaat-aagaacatccaatcattcttttgcattgcaatgatg |
298 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
26121482 |
ataagatgaaagaacatccaattttttttcctgcttttgtttagcttttatctggagtccaataaagaacatccaatcattcttgtgccttgcaatgatg |
26121581 |
T |
|
| Q |
299 |
at |
300 |
Q |
| |
|
|| |
|
|
| T |
26121582 |
at |
26121583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 26156160 - 26156375
Alignment:
| Q |
9 |
tgagagcaaagaaacttggtgatgctgccaagaggactatagaggaaggtggagattcttacaacaacttgattcagttgattgatgagctgaaatcatt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26156160 |
tgagagcaaagaaacttggtgatgctgccaagaggactatagaagaaggtggagattcttacaacaacttgattcagttgattgatgatctgaaatcatt |
26156259 |
T |
|
| Q |
109 |
gaagaaatctaaagcacttgatgagaaagtgattagataagtcaaatgaaggagtaatgtttgatgcatcaggaggtgtatctgatgaaggctttcaata |
208 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||| | ||||| |||||||||||||| ||||||||| |
|
|
| T |
26156260 |
gaagaaatctaaaccacttgatgagaaagtgattagataagtcaaatgaaggagtagtggttgatgctttaggagatgtatctgatgaagactttcaata |
26156359 |
T |
|
| Q |
209 |
agatgaaagaacatcc |
224 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
26156360 |
agatgaaacaacatcc |
26156375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 26129537 - 26129757
Alignment:
| Q |
7 |
gatgagagcaaagaaacttggtgatgctgccaagaggactatagaggaaggtggagattcttacaacaacttgattcagttgattgatgagctgaaatca |
106 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26129537 |
gatgagagcaaaaaagcttggtgaggctgccaagaggactattgaggaaggtggagattcttacaacaacttgattcaattgattgatgagctgaaatca |
26129636 |
T |
|
| Q |
107 |
ttgaagaaatctaaagcacttgatgagaaag-tgattagataagtcaaatgaaggagtaatgtttgatgcatcaggaggtgtatctgatgaaggctttca |
205 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | |
|
|
| T |
26129637 |
ttgaagaaatctaaagcacttggtgagaaagcagattagataagtcaaatgaaggagtaatgtttgatgcttcaggaggtgtatttgatgaaggctttta |
26129736 |
T |
|
| Q |
206 |
ataagatgaaagaacatccaa |
226 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
26129737 |
ataagatgaaagaacatccaa |
26129757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 26180050 - 26180267
Alignment:
| Q |
7 |
gatgagagcaaagaaacttggtgatgctgccaagaggactatagaggaaggtggagattcttacaacaacttgattcagttgattgatgagctgaaatca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26180050 |
gatgagagcaaagaaacttggtgatgcttccaagaggactattgaggaaggtggagattcttacaacaacttgattcagttgattgatgagctgaaatca |
26180149 |
T |
|
| Q |
107 |
ttgaagaaatctaaagcacttgatgagaaag-tgattagataagtcaaatgaaggagtaatgtttgatgcatcaggaggtgtatctgatgaaggctttca |
205 |
Q |
| |
|
|| ||||||||||| ||||||| || ||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||| | |||||||||||||| |
|
|
| T |
26180150 |
ttaaagaaatctaaggcacttggtgtgaaagcagattagataagtcaaatgaaggagtgatgtttgatgcttcaggaggtgtagcagatgaaggctttca |
26180249 |
T |
|
| Q |
206 |
ataagatgaaagaacatc |
223 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
26180250 |
ataagatgaaacaacatc |
26180267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 19102727 - 19102528
Alignment:
| Q |
7 |
gatgagagcaaagaaacttggtgatgctgccaagaggactatagaggaaggtggagattcttacaacaacttgattcagttgattgatgagctgaaatca |
106 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| | ||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19102727 |
gatgagagcaaagaagcttggtgatgctgcaaagaggactatagaggagggtggacactctcacaacaacttgattctgttgattgatgagctgaaatca |
19102628 |
T |
|
| Q |
107 |
ttgaagaaatctaaagcacttgatgagaaag-tgattagataagtcaaatgaaggagtaatgtttgatgcatcaggaggtgtatctgatgaaggctttca |
205 |
Q |
| |
|
|||||||||||||| |||||| |||||||| |||||||||| ||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
19102627 |
ttgaagaaatctaagtcacttggtgagaaagcagattagataattcaaatgaaggagtaatgtttgatgtttcagtaggtgtagttgatgaaggctttca |
19102528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 26243367 - 26243497
Alignment:
| Q |
7 |
gatgagagcaaagaaacttggtgatgctgccaagaggactatagaggaaggtggagattcttacaacaacttgattcagttgattgatgagctgaaatca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26243367 |
gatgagagcaaagaaacttggtgatgctgccaaaaggactatagaggagggtggagattcttacaacaacttgattcagttgattgatgagctgaaatcg |
26243466 |
T |
|
| Q |
107 |
ttgaagaaatctaaagcacttgatgagaaag |
137 |
Q |
| |
|
||||||||||||||| | ||||||||||||| |
|
|
| T |
26243467 |
ttgaagaaatctaaaacgcttgatgagaaag |
26243497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 26278663 - 26278782
Alignment:
| Q |
7 |
gatgagagcaaagaaacttggtgatgctgccaagaggactatagaggaaggtggagattcttacaacaacttgattcagttgattgatgagctgaaatca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26278663 |
gatgagagcaaagaaacttggtgatgctgccaagaggactatagaggaaggtggacactcttacaacaacttgattcaattgattgatgagctgaaatca |
26278762 |
T |
|
| Q |
107 |
ttgaagaaatctaaagcact |
126 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
26278763 |
ttgaagaaatctaaagcact |
26278782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 26192232 - 26192353
Alignment:
| Q |
7 |
gatgagagcaaagaaacttggtgatgctgccaagaggactatagaggaaggtggagattcttacaacaacttgattcagttgattgatgagctgaaatca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26192232 |
gatgagagcaaagaaacttggtgatgcttccaagaggactatagaggaaggtggacattcatacaacaacttgattcagttcattgatgagctgaaatca |
26192331 |
T |
|
| Q |
107 |
ttgaagaaatctaaagcacttg |
128 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
26192332 |
ctgaagaaatctaaagcacttg |
26192353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 26298415 - 26298534
Alignment:
| Q |
7 |
gatgagagcaaagaaacttggtgatgctgccaagaggactatagaggaaggtggagattcttacaacaacttgattcagttgattgatgagctgaaatca |
106 |
Q |
| |
|
||||||||||||||||||| | || |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26298415 |
gatgagagcaaagaaacttagcgaggctgccaagaggactatagaagaaggtggagattcttacaacaacttgattcaattgattgatgagctgaaatca |
26298514 |
T |
|
| Q |
107 |
ttgaagaaatctaaagcact |
126 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
26298515 |
ttgaagaaatctaaagcact |
26298534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 26251815 - 26251936
Alignment:
| Q |
7 |
gatgagagcaaagaaacttggtgatgctgccaagaggactatagaggaaggtggagattcttacaacaacttgattcagttgattgatgagctgaaatca |
106 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26251815 |
gatgagagcaaagaaacttggcgatgcagccaaaaggacgatagaggaaggtggagattcttacaacaacttgattcagttgattgatgagctgaaatca |
26251914 |
T |
|
| Q |
107 |
ttgaagaaatctaaagcacttg |
128 |
Q |
| |
|
|||||||||| |||||| |||| |
|
|
| T |
26251915 |
ttgaagaaatataaagcgcttg |
26251936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 26204852 - 26204958
Alignment:
| Q |
7 |
gatgagagcaaagaaacttggtgatgctgccaagaggactatagaggaaggtggagattcttacaacaacttgattcagttgattgatgagctgaaatca |
106 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26204852 |
gatgagagcaaagaagcttggtgatgctgccaagaagactatagaggaaggtggagattcttacaacaacttgattcagttgattgatgagctaaaatca |
26204951 |
T |
|
| Q |
107 |
ttgaaga |
113 |
Q |
| |
|
||||||| |
|
|
| T |
26204952 |
ttgaaga |
26204958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 26224489 - 26224595
Alignment:
| Q |
7 |
gatgagagcaaagaaacttggtgatgctgccaagaggactatagaggaaggtggagattcttacaacaacttgattcagttgattgatgagctgaaatca |
106 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
26224489 |
gatgagagcaaagaagcttggtgatgctgcaaagaagactatagaggaaggtggagattcttacaacaacttgattcaattgattgatgagctaaaatca |
26224588 |
T |
|
| Q |
107 |
ttgaaga |
113 |
Q |
| |
|
||||||| |
|
|
| T |
26224589 |
ttgaaga |
26224595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 26129789 - 26129836
Alignment:
| Q |
254 |
gagtccaataa-gaacatccaatcattcttttgcattgcaatgatgat |
300 |
Q |
| |
|
||||||||||| ||||||||||||||| || ||||||||||||||||| |
|
|
| T |
26129789 |
gagtccaataaagaacatccaatcatttttgtgcattgcaatgatgat |
26129836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 26260842 - 26260945
Alignment:
| Q |
10 |
gagagcaaagaaacttggtgatgctgccaagaggactatagaggaaggtggagattcttacaacaacttgattcagttgattgatgagctgaaatcattg |
109 |
Q |
| |
|
|||||||| |||||| ||||||| || |||| || |||||||| |||||| ||||||||||| ||||| || || || |||||||| ||||||||| |
|
|
| T |
26260842 |
gagagcaagaaaactttgtgatgcagctaagaagagcatagaggagggtggaacctcttacaacaatttgatgcaatttatagatgagcttaaatcattg |
26260941 |
T |
|
| Q |
110 |
aaga |
113 |
Q |
| |
|
|||| |
|
|
| T |
26260942 |
aaga |
26260945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 44904223 - 44904416
Alignment:
| Q |
10 |
gagagcaaagaaacttggtgatgctgccaagaggactatagaggaaggtggagattcttacaacaacttgattcagttgattgatgagctgaaatcattg |
109 |
Q |
| |
|
||||||||| || |||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
44904223 |
gagagcaaaaaagtttggcgatgctgccaagaggactatagaggaaggtggacactcttacaacaacttggttcagttgatagatgagctgaaatcattg |
44904322 |
T |
|
| Q |
110 |
aagaaatctaaagcacttgatgagaaag-tgattagataagtcaaatgaaggagtaatgtttgatgcatcaggaggtgtatctgatgaaggcttt |
203 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||||||||| | |||||||| ||||| ||| ||||| | |||||||| ||| |||||||||| |
|
|
| T |
44904323 |
aagaaatccaaagcacttggtgagaaagcagattagataactgaaatgaagatgtaat-cttgttgcattaagaggtgtagctggtgaaggcttt |
44904416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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