View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11457_low_16 (Length: 297)
Name: NF11457_low_16
Description: NF11457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11457_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 10314169 - 10313899
Alignment:
| Q |
17 |
aatcacaaaccgcaatctcctgtcctgttgttgaagaggacaaagtcgtatcttattcttaggtaaatgtcttgatcttgcactgtgattggtcttctat |
116 |
Q |
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| T |
10314169 |
aatcacaaaccgcaatctcctgtcctgttgttgaagtggacaaagtcgtatcttattcttaggtaaatgtcttgatcttgcactgtgattggtcttctat |
10314070 |
T |
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| Q |
117 |
tgtaatcttcaattcaatgtattcagtcctttaattggttttaatttgtctttgtcgttactctgcaaactcttatattgtggtaaaattgaaagcatgt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10314069 |
tgtaatcttcaattcaatgtattcagtcctttaattggttttaatttgtctttgtcgttactctgcaaactcttatactgtggtaaaattgaaagcatgt |
10313970 |
T |
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| Q |
217 |
tctctatcaattcttactgcaattaactaattattaatgacattgaaatcaaacatgtcttgaggtctctg |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10313969 |
tctctatcaattcttactgcaattaactaattattaatgacattgaaatcaaacatgtcttggggtctctg |
10313899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 15828509 - 15828239
Alignment:
| Q |
17 |
aatcacaaaccgcaatctcctgtcctgttgttgaagaggacaaagtcgtatcttattcttaggtaaatgtcttgatcttgcactgtgattggtcttctat |
116 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
15828509 |
aatcacaaaccgcaatctcctgtccttttgttgaagaggacaaagtcgtatcttattcttaggtaaatgtcttgatcatgcactgtgattagtcttctat |
15828410 |
T |
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| Q |
117 |
tgtaatcttcaattcaatgtattcagtcctttaattggttttaatttgtctttgtcgttactctgcaaactcttatattgtggtaaaattgaaagcatgt |
216 |
Q |
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| T |
15828409 |
tgtaatcttcaattcaatgtattcagtcctttaattggttttaatttgtctttgtcgttactctgcaaactcttatattgtggtaaaattgaaagcatgt |
15828310 |
T |
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| Q |
217 |
tctctatcaattcttactgcaattaactaattattaatgacattgaaatcaaacatgtcttgaggtctctg |
287 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
15828309 |
tctctatcaattcttactgcaattaactatttattaatgacattgaaatcaaacatgtcttggggtctctg |
15828239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 52220111 - 52220054
Alignment:
| Q |
211 |
gcatgttctctatcaattcttactgcaattaactaattattaatgacattgaaatcaa |
268 |
Q |
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||||||||||| ||||| |||| ||||||||||||||||| | || |||||||||||| |
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| T |
52220111 |
gcatgttctctttcaatgcttattgcaattaactaattatcagtggcattgaaatcaa |
52220054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 16428345 - 16428074
Alignment:
| Q |
17 |
aatcacaaaccgcaatctcctgtcctgttgttgaagaggacaaagtcgtatctta-ttcttaggtaaatgtcttgatcttgcactgtgattggtcttcta |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16428345 |
aatcacaaaccgcaatctcctgtcctgttgttgaagaggacaaagtcgtatcttaattcttaggtaaatgtcttgatcttgcactgtgattggtcttcta |
16428246 |
T |
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| Q |
116 |
ttgtaatcttcaattcaatgtattcagtcctttaattggttttaatttgtctttgtcgttactctgcaaactcttatattgtggtaaaattgaaagcatg |
215 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16428245 |
ttgtaatcttcaattcaatgtattcaatcctttaattggttttaatttgtctttgtcgttactctgcaaactcttatattgtggtaaaattgaaagcatg |
16428146 |
T |
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| Q |
216 |
ttctctatcaattcttactgcaattaactaattattaatgacattgaaatcaaacatgtcttgaggtctctg |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16428145 |
ttctctatcaattcttactgcaattaactaattattaatgacattgaaatcaaacatgtcttggggtctctg |
16428074 |
T |
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