View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11457_low_2 (Length: 551)

Name: NF11457_low_2
Description: NF11457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11457_low_2
NF11457_low_2
[»] chr4 (16 HSPs)
chr4 (17-373)||(4847948-4848304)
chr4 (142-351)||(4851021-4851230)
chr4 (372-537)||(4848328-4848493)
chr4 (17-101)||(5187530-5187614)
chr4 (418-540)||(5199184-5199308)
chr4 (424-508)||(4851726-4851810)
chr4 (372-439)||(4851644-4851711)
chr4 (67-127)||(4850865-4850925)
chr4 (290-373)||(5141074-5141157)
chr4 (372-449)||(4851477-4851554)
chr4 (294-373)||(5205286-5205365)
chr4 (292-353)||(4846628-4846689)
chr4 (292-353)||(5192592-5192653)
chr4 (294-365)||(5165227-5165298)
chr4 (238-293)||(5205497-5205552)
chr4 (308-360)||(7122027-7122079)


Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-175; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 4847948 - 4848304
Alignment:
Q  17 atatatgccatgtatcaatgctgctaatcaatgagaatcacttttaccctacatcttctaactttttcctttcccctctcatattcaaccactcaataat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4847948 atatatgccatgtatcaatgctgctaatcaatgagaatcacttttaccctacatcttctaactttttcctttcccctctcatattcaaccactcaagaat 4848047  T
Q  117 ttttagatattnnnnnnngttgaaagtgcttaatgaatatgtcaatcaacaaaccaattgctgcacaaatcgagctggcataactcttcagagaatatgt 216  Q
    |||||||||||       ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  4848048 ttttagatattaaaaaaagtttaaagtgcttaatgaatatgtcaatcaacaaaccaattgctgcacaaatcgagctggcataactcttcatagaatatat 4848147  T
Q  217 tgttgatggataggtccattatatgtgaccagaagaaatgttagagcatttaactcagttccaagaacaaaaattgcattaacatcaatgtcacaaaata 316  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4848148 tgttgagggataggtccattatatgtgaccagaagaaatgttagagcatttaactcagttccaagaacaaaaattgcattaacatcaatgtcacaaaata 4848247  T
Q  317 aaaatggaaactaattatcaaacccaactttatttttgataaatttatgtttattgt 373  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4848248 aaaatggaaactaattatcaaacccaactttatttttgataaatgtatgtttattgt 4848304  T

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Target: chr4; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 142 - 351
Target Start/End: Original strand, 4851021 - 4851230
Alignment:
Q  142 gtgcttaatgaatatgtcaatcaacaaaccaattgctgcacaaatcgagctggcataactcttcagagaatatgttgttgatggataggtccattatatg 241  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  4851021 gtgcttaatgaaaatgtcaatcaacaaaccaattgctgcacaaatcgagctggcgtaactcttcatagaatatgttgttgagggataggtccattatatg 4851120  T
Q  242 tgaccagaagaaatgttagagcatttaactcagttccaagaacaaaaattgcattaacatcaatgtcacaaaataaaaatggaaactaattatcaaaccc 341  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  4851121 tgaccagaagaaatgttagagcatttaactctgttccaagaacaaaaattacattaacatcaatgtcacaaaataaaaatggaaactaattatcaaacct 4851220  T
Q  342 aactttattt 351  Q
    ||||||||||    
T  4851221 aactttattt 4851230  T

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Target: chr4; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 372 - 537
Target Start/End: Original strand, 4848328 - 4848493
Alignment:
Q  372 gtacagggactaaggagtgtctgatactgttcttctccattataacatagtgaacaaaaatcacataaacaacgaaagcaaaatctcattacgtggtgac 471  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||    
T  4848328 gtacagggactaaggagtgtctgattctgttcttctccgttataacatagagaacaaaaatcacataaacaacgaaaacaaaatcttattacgtggtgac 4848427  T
Q  472 gaaacgttgttacggctgcaacgaacagtaggaaatacatttattgtctcatttgatttttgtgtt 537  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4848428 gaaacgtcgttacggctgcaacgaacggtaggaaatacatttattgtctcatttgatttttgtgtt 4848493  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 5187614 - 5187530
Alignment:
Q  17 atatatgccatgtatcaatgctgctaatcaatgagaatcacttttaccctacatcttctaactttttcctttcccctctcatatt 101  Q
    ||||||||||||||||||||  | |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  5187614 atatatgccatgtatcaatgtagttaatcaatgagaatcagttttaccctacatcttctaaccttttcctttcccctctcatatt 5187530  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 418 - 540
Target Start/End: Complemental strand, 5199308 - 5199184
Alignment:
Q  418 atagtgaacaaaaatcacataaacaacgaaagcaaaatctcattacgtggtgacgaaacgttgttacggctgcaacgaacagtagg--aaatacatttat 515  Q
    |||| |||||||||||| |||||||||||||| ||||| | |||| | |  |||||||||| |||||||||||||||||| |||||  | ||||||||||    
T  5199308 atagcgaacaaaaatcaaataaacaacgaaagaaaaattttattatgcgacgacgaaacgtcgttacggctgcaacgaacggtagggaacatacatttat 5199209  T
Q  516 tgtctcatttgatttttgtgttctt 540  Q
    |||||||||| ||||||||| ||||    
T  5199208 tgtctcatttaatttttgtggtctt 5199184  T

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Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 424 - 508
Target Start/End: Original strand, 4851726 - 4851810
Alignment:
Q  424 aacaaaaatcacataaacaacgaaagcaaaatctcattacgtggtgacgaaacgttgttacggctgcaacgaacagtaggaaata 508  Q
    |||||||||||||||||||| ||||||||||||| |||||| ||  |||||||||||||||||||||||||||| ||||| ||||    
T  4851726 aacaaaaatcacataaacaaagaaagcaaaatcttattacgcggcaacgaaacgttgttacggctgcaacgaacggtagggaata 4851810  T

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Target: chr4; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 372 - 439
Target Start/End: Original strand, 4851644 - 4851711
Alignment:
Q  372 gtacagggactaaggagtgtctgatactgttcttctccattataacatagtgaacaaaaatcacataa 439  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||    
T  4851644 gtacagggactaaggagtgtcagatactgttcttctccgttataacatagagaacaaaaatcacataa 4851711  T

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Target: chr4; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 4850865 - 4850925
Alignment:
Q  67 acatcttctaactttttcctttcccctctcatattcaaccactcaataatttttagatatt 127  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4850865 acattttctaactttttcctttcccctctcatattcaaccactcaagaatttttagatatt 4850925  T

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Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 373
Target Start/End: Complemental strand, 5141157 - 5141074
Alignment:
Q  290 ttgcattaacatcaatgtcacaaaataaaaatggaaactaattatcaaacccaactttatttttgataaatttatgtttattgt 373  Q
    ||||||||||||||||||||||||||| ||| || |||||||||||||||||||||| |||||| | |||| ||||| ||||||    
T  5141157 ttgcattaacatcaatgtcacaaaatataaaagggaactaattatcaaacccaacttcattttttagaaatgtatgtatattgt 5141074  T

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Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 449
Target Start/End: Original strand, 4851477 - 4851554
Alignment:
Q  372 gtacagggactaaggagtgtctgatactgttcttctccattataacatagtgaacaaaaatcacataaacaacgaaag 449  Q
    ||||||||||||||||||| ||||||| |||||||||| || |||||||  |||||||||| ||||||||||||||||    
T  4851477 gtacagggactaaggagtgcctgataccgttcttctccgttttaacataacgaacaaaaattacataaacaacgaaag 4851554  T

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Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 294 - 373
Target Start/End: Complemental strand, 5205365 - 5205286
Alignment:
Q  294 attaacatcaatgtcacaaaataaaaatggaaactaattatcaaacccaactttatttttgataaatttatgtttattgt 373  Q
    |||||||||||||||| |||||||||| || |||||||||||||||||||||| |||||| | |||| ||||| ||||||    
T  5205365 attaacatcaatgtcataaaataaaaaagggaactaattatcaaacccaacttcattttttagaaatgtatgtatattgt 5205286  T

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Target: chr4; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 4846628 - 4846689
Alignment:
Q  292 gcattaacatcaatgtcacaaaataaaaatggaaactaattatcaaacccaactttattttt 353  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||    
T  4846628 gcattaacatcaatgtcacaaaatataaaaggaaactaattatcaaacccagcttcattttt 4846689  T

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Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 5192653 - 5192592
Alignment:
Q  292 gcattaacatcaatgtcacaaaataaaaatggaaactaattatcaaacccaactttattttt 353  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||| ||||||    
T  5192653 gcattaacatcaatgtcacaaaatataaaaggaaactatttatcaaacccagcttcattttt 5192592  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 294 - 365
Target Start/End: Complemental strand, 5165298 - 5165227
Alignment:
Q  294 attaacatcaatgtcacaaaataaaaatggaaactaattatcaaacccaactttatttttgataaatttatg 365  Q
    |||||||| ||  |||||||||| ||| || |||||||||||||||||||||| |||||||| |||| ||||    
T  5165298 attaacattaaaatcacaaaatataaaagggaactaattatcaaacccaacttcatttttgagaaatgtatg 5165227  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 5205552 - 5205497
Alignment:
Q  238 tatgtgaccagaagaaatgttagagcatttaactcagttccaagaacaaaaattgc 293  Q
    ||||||||||||||||| ||||||||| || ||||  |||||||||||| ||||||    
T  5205552 tatgtgaccagaagaaaagttagagcacttgactcttttccaagaacaacaattgc 5205497  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 7122027 - 7122079
Alignment:
Q  308 cacaaaataaaaatggaaactaattatcaaacccaactttatttttgataaat 360  Q
    ||||||||||||| || |||||| ||||||||||| ||| |||||||| ||||    
T  7122027 cacaaaataaaaaagggaactaaatatcaaacccagcttcatttttgagaaat 7122079  T

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