View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11457_low_5 (Length: 453)
Name: NF11457_low_5
Description: NF11457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11457_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 11 - 432
Target Start/End: Complemental strand, 12425559 - 12425138
Alignment:
| Q |
11 |
gatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12425559 |
gatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatc |
12425460 |
T |
|
| Q |
111 |
aaagaaaccctgaggttacacccacctgctacattgctcatgagagaatgcagggaagcgtgcaacataggtggatatgaaatacctttaaagactaact |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
12425459 |
aaagaaaccctgaggttacacccacctgctacattgctcatgagagaatgcagggaagcgtgcaacataggtggatatgaaatacctttaaaaactaact |
12425360 |
T |
|
| Q |
211 |
taatattaaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtttcatgatagtaatggttttgattt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12425359 |
taatattaaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtttcatgatagtactggttttgattt |
12425260 |
T |
|
| Q |
311 |
caataaagtgaatgataatagctttcagtatttcccttttggaggaggaagaagaatgtgtccaggaattttgtttggcttggcaaatattgagcttcct |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12425259 |
taataaagtgaatgataatagctttcagtatttcccttttggaggaggaagaagaatgtgtccaggaattttgtttggcttggcaaatattgagcttcct |
12425160 |
T |
|
| Q |
411 |
ctggctgcattactttaccact |
432 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
12425159 |
ctggctgcattactttaccact |
12425138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 21 - 432
Target Start/End: Original strand, 12268136 - 12268547
Alignment:
| Q |
21 |
gcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccc |
120 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||| ||||| |||||| | ||| ||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
12268136 |
gcacaagctgaaataagagaagtttgtaaaggtaagaagagaatttatgaaagtgatttgcatgaacttagttacttgaagtcagtgatcaaagaaaccc |
12268235 |
T |
|
| Q |
121 |
tgaggttacacccacctgctacattgctcatgagagaatgcagggaagcgtgcaacataggtggatatgaaatacctttaaagactaacttaatattaaa |
220 |
Q |
| |
|
|||||||||||||||||| | || | || | ||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
12268236 |
tgaggttacacccacctggtgcaatacttacaagagaatgcagggaagcatgcaacataggaggatatgaaatacctataaagactaatttaatattaaa |
12268335 |
T |
|
| Q |
221 |
tgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtttcatgatagtaatggttttgatttcaataaagtg |
320 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||| |||||||||||||| |||||||||||||||| || |||||||||||| ||||||||| |
|
|
| T |
12268336 |
tgcatgggcaattggaagagatcccaatcattggtctgatgcagagaagtttatacctgagaggtttcatgataatactggttttgattttaataaagtg |
12268435 |
T |
|
| Q |
321 |
aatgataatagctttcagtatttcccttttggaggaggaagaagaatgtgtccaggaattttgtttggcttggcaaatattgagcttcctctggctgcat |
420 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| | |
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|
| T |
12268436 |
aatgataatagctttcagtacatcccttttggaggaggaagaagaatgtgtccaggagttttgtttggtttagcaaatattgagcttcctctggctgcct |
12268535 |
T |
|
| Q |
421 |
tactttaccact |
432 |
Q |
| |
|
|||||||||||| |
|
|
| T |
12268536 |
tactttaccact |
12268547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 421
Target Start/End: Complemental strand, 55955232 - 55954819
Alignment:
| Q |
11 |
gatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatc |
110 |
Q |
| |
|
||||||||| |||||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| | |||||||||| ||||||| |
|
|
| T |
55955232 |
gatgaagaaagcacaatccgaaataagagaagctgttaaagggaaaaagagaatatatgagagtgatctacatgaacttagttacttgaagtcagtgatc |
55955133 |
T |
|
| Q |
111 |
aaagaaaccctgaggttacacccacctgctacattgctcatgagagaatgcagggaagcgtgcaacataggtggatatgaaatacctttaaagactaact |
210 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||| ||||||||| | |
|
|
| T |
55955132 |
aaagaaaccatgaggttacacccaccttttactttgcttccaagagaatgcagggaagcttgcaacatagatggatatgaaataccaataaagactagcg |
55955033 |
T |
|
| Q |
211 |
taatattaaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtttcatgatagtaatggttttgattt |
310 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||| || |||||| ||||||||| |||||||||||| |
|
|
| T |
55955032 |
tgatagtaaatgcatgggcaattggaagagatcccaaacattggtatgatgcaaagaagtttatacctgaaaggtttaatgatagtactggttttgattt |
55954933 |
T |
|
| Q |
311 |
caataaagtg---aatgataatagctttcagtatttcccttttggaggaggaagaagaatgtgtccaggaattttgtttggcttggcaaatattgagctt |
407 |
Q |
| |
|
|||||| || ||| ||||||||||| | || | |||||||| |||||||||||||||||||| ||||||| | ||||||| || |||||||||||| |
|
|
| T |
55954932 |
taataaattgaacaataataatagctttgattacatgccttttgggggaggaagaagaatgtgtccgggaatttcgcttggcttagctaatattgagctt |
55954833 |
T |
|
| Q |
408 |
cctctggctgcatt |
421 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
55954832 |
cctctggctgcatt |
55954819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 422
Target Start/End: Complemental strand, 55958788 - 55958371
Alignment:
| Q |
11 |
gatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatc |
110 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | |||||||||| ||||||| |||||||||||||||||| ||||| | |||||||| | ||||||| |
|
|
| T |
55958788 |
gatgaagaaggcacaatctgaaataagagaaacctttaaaggtaaaaagagaacatatgagagtgatctacaagaacttagttacttgaattcagtgatc |
55958689 |
T |
|
| Q |
111 |
aaagaaaccctgaggttacacccacctgctacattgctcatgagagaatgcagggaagcgtgcaacataggtggatatgaaatacctttaaagactaact |
210 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
55958688 |
aaagaaactatgaggttacatccacctgctactttgcttataagagaatgcagggaagcatgcaacataggtggatatgaaataccaataaagactaatg |
55958589 |
T |
|
| Q |
211 |
taatattaaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtttcatgatagtaatggttttgattt |
310 |
Q |
| |
|
| || ||||||| |||||||| ||||||||||| || |||||| |||||| |||||||||||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
55958588 |
tgttagtaaatgcttgggcaatgtgaagagatcccaaatattggtatgatgcagagaagtttatacctgagaggtttcatgacagtaaatattttgattt |
55958489 |
T |
|
| Q |
311 |
caataaagtg------aatgataatagctttcagtatttcccttttggaggaggaagaagaatgtgtccaggaattttgtttggcttggcaaatattgag |
404 |
Q |
| |
|
||||||||| ||| |||||| |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
55958488 |
taataaagtgaatagtaataataataactttgaatacatcccttttggaggaggaagaagaatgtgtccaggaattttgtttggcttagctaatattgag |
55958389 |
T |
|
| Q |
405 |
cttcctctggctgcatta |
422 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
55958388 |
cttcctcttgctgcatta |
55958371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 57 - 421
Target Start/End: Complemental strand, 41795954 - 41795585
Alignment:
| Q |
57 |
aagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccctgag--gttacacccacctgctacattgctcatgag |
154 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||| |||| |||||| |||||| ||| ||||| || |
|
|
| T |
41795954 |
aagagaatatatgagagtgatctacatgaacttggttacttaaagtcagtgatcaaagaaacaatgagaggttacatccaccttttactttgcttccaag |
41795855 |
T |
|
| Q |
155 |
agaatgcagggaagcgtgcaacataggtggatatgaaatacctttaaagactaacttaatattaaatgcatgggcaattggaagagatcccgaacattgg |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||| |||||||||||| || |||| |
|
|
| T |
41795854 |
agaatgcagggaagcgtgcaacataggtggatatgaaatacctataaagactagtgtgatagtaaatgcatgggcaatcggaagagatcccaaatattga |
41795755 |
T |
|
| Q |
255 |
tctgatgctgagaagtttataccggagaggtttcatgatagtaatggttttgatttcaataaagtgaa---tgataatagctttcagtatttcccttttg |
351 |
Q |
| |
|
| |||||| || || ||||||| |||||||||| || ||||| | |||||| || ||||||||||| | |||||| |||| | || |||||| | |
|
|
| T |
41795754 |
tatgatgcagataattttatacataagaggtttcaggacagtaaagattttgaatttaataaagtgaatagtaataataactttgaatacatcccttcta |
41795655 |
T |
|
| Q |
352 |
gaggaggaagaagaatgtgtccaggaattttgtttggcttggcaaatattgagcttcctctggctgcatt |
421 |
Q |
| |
|
| | |||||||||||||||||| ||||||| | ||||||| || || |||||||||||||| |||||||| |
|
|
| T |
41795654 |
gggaaggaagaagaatgtgtccgggaatttcgcttggcttagctaacattgagcttcctctagctgcatt |
41795585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 7141427 - 7141548
Alignment:
| Q |
16 |
agaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatcaaaga |
115 |
Q |
| |
|
||||||||||||||||| ||||| |||| | || |||||| | ||||||||| | |||| || | ||||| | ||||| ||||||||||||||||| |
|
|
| T |
7141427 |
agaaggcacaagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaaga |
7141526 |
T |
|
| Q |
116 |
aaccctgaggttacacccacct |
137 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
7141527 |
aacattgaggttacacccacct |
7141548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 7154202 - 7154318
Alignment:
| Q |
21 |
gcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccc |
120 |
Q |
| |
|
|||||||||||| |||||||||| | ||||| ||||| | ||||| ||| ||||||| || |||| ||||| |||||||||||||||||||| |
|
|
| T |
7154202 |
gcacaagctgaactaagagaagcattcaaaggaaagaaaataatatctgaatctgatctaaatgaactaacttactttaagttagtgatcaaagaaacaa |
7154301 |
T |
|
| Q |
121 |
tgaggttacacccacct |
137 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
7154302 |
tgaggttacacccacct |
7154318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 296
Target Start/End: Original strand, 7141631 - 7141710
Alignment:
| Q |
217 |
taaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtttcatgatagt |
296 |
Q |
| |
|
||||||| |||||||| ||||||||||| || ||||| ||||||||||| |||||| || ||||||||| |||||||| |
|
|
| T |
7141631 |
taaatgcgtgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagt |
7141710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 7131693 - 7131730
Alignment:
| Q |
6 |
agtgagatgaagaaggcacaagctgaaataagagaagc |
43 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
7131693 |
agtgtgatgaacaaggcacaagctgaaataagagaagc |
7131730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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