View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11457_low_6 (Length: 450)
Name: NF11457_low_6
Description: NF11457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11457_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 121; Significance: 8e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 158 - 381
Target Start/End: Original strand, 23180403 - 23180640
Alignment:
| Q |
158 |
tttctttcctacatgattaatgtcatcatttaaaggaatatacaatgga-accaaagtaatt--------gcaatgaa-----gaattttgctaattgac |
243 |
Q |
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| T |
23180403 |
tttctttcatacatgattaatgacatcatttaaaggaatatacaatgaacaccaaactaattaaatcattggaatgaatggaagtattttgctaattgat |
23180502 |
T |
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| Q |
244 |
aattctcttgtttagattctaatgcaattggaaggcatggaaacaggaagaggaatctactagtaattgttattttgatctcatttctactatttctttt |
343 |
Q |
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| T |
23180503 |
aattctccttttcagattctaatgcaattggaagacatggaaacgggaagaggaatctacttgtaattgttattttgatctcatttctactatttcttgt |
23180602 |
T |
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| Q |
344 |
actgctttgcctatttgtttaccggactagaaagcaaa |
381 |
Q |
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| T |
23180603 |
actggtttgcctatttgtttaccggactagaaagcaaa |
23180640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 231 - 381
Target Start/End: Original strand, 23188675 - 23188825
Alignment:
| Q |
231 |
tttgctaattgacaattctcttgtttagattctaatgcaattggaaggcatggaaacaggaagaggaatctactagtaattgttattttgatctcatttc |
330 |
Q |
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| T |
23188675 |
tttgctaattgacaattctcttcttcagattctaatgcaattggaagacaaggaaacgggaagaggaatctacttataattgttattttgatctcatttc |
23188774 |
T |
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| Q |
331 |
tactatttcttttactgctttgcctatttgtttaccggactagaaagcaaa |
381 |
Q |
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| T |
23188775 |
tactatttcttttactgctttgcctatttgtttaccgaactagaaagcaaa |
23188825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 381
Target Start/End: Complemental strand, 21181285 - 21181170
Alignment:
| Q |
266 |
tgcaattggaaggcatggaaacaggaagaggaatctactagtaattgttattttgatctcatttctactatttcttttactgctttgcctatttgtttac |
365 |
Q |
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| T |
21181285 |
tgcagttggaagacatgaaaacaggaagaggaatctaattctaattgctactttgatctcatttctaatattgcttatactgattggtttatttgtttac |
21181186 |
T |
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| Q |
366 |
cggactagaaagcaaa |
381 |
Q |
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| T |
21181185 |
tggactagaaagcaaa |
21181170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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