View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11457_low_8 (Length: 395)

Name: NF11457_low_8
Description: NF11457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11457_low_8
NF11457_low_8
[»] chr7 (4 HSPs)
chr7 (116-380)||(35450885-35451149)
chr7 (67-117)||(35450788-35450838)
chr7 (264-324)||(25635870-25635930)
chr7 (303-346)||(24118411-24118454)
[»] chr8 (2 HSPs)
chr8 (231-323)||(13402226-13402318)
chr8 (295-327)||(23489967-23489999)
[»] chr1 (3 HSPs)
chr1 (283-324)||(9457757-9457798)
chr1 (283-324)||(9461854-9461895)
chr1 (294-347)||(26828587-26828640)
[»] chr6 (2 HSPs)
chr6 (300-352)||(14289828-14289880)
chr6 (304-344)||(9771913-9771953)
[»] chr3 (1 HSPs)
chr3 (231-347)||(32104130-32104245)
[»] chr2 (1 HSPs)
chr2 (300-352)||(42237563-42237615)
[»] scaffold0472 (1 HSPs)
scaffold0472 (302-347)||(11808-11853)
[»] chr4 (1 HSPs)
chr4 (283-324)||(25968142-25968183)


Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 116 - 380
Target Start/End: Original strand, 35450885 - 35451149
Alignment:
Q  116 tcccaaacagttaaagctaacgacttatagcctaatcatcataccaattgctaaatccatacaaatttttcatttttatcaaaatactaaataaatcagt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35450885 tcccaaacagttaaagctaacgacttatagcctaatcatcataccaattgctaaatccatacaaatttttcatttttatcaaaatactaaataaatcagt 35450984  T
Q  216 acaccttaatgaaataggttttaaataacgctcgaggtcgcgttaagaattttgtgatttcggttgttacggattgccattgttgcggtgtgaattaatc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35450985 acaccttaatgaaataggttttaaataacgctcgaggtcgcgttaagaattttgtgatttcggttgttacggattgccattgttgcggtgtgaattaatc 35451084  T
Q  316 acaacattgtacgaattttattaaaattatttgtattttttaagtgacaaatgttagtaattagt 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35451085 acaacattgtacgaattttattaaaattatttgtattttttaagtgacaaatgttaataattagt 35451149  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 35450788 - 35450838
Alignment:
Q  67 ctcaacactaatagcaatccttaggtaatgaataatgatgcaactagtttc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35450788 ctcaacactaatagcaatccttaggtaatgaataatgatgcaactagtttc 35450838  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 25635870 - 25635930
Alignment:
Q  264 attttgtgatttcggttgttacggattgccattgttgcggtgtgaattaatcacaacattg 324  Q
    |||||| |||||||| |||||||||||||  ||||||||||||||||||||||||||||||    
T  25635870 attttgcgatttcggctgttacggattgcggttgttgcggtgtgaattaatcacaacattg 25635930  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 24118454 - 24118411
Alignment:
Q  303 gtgtgaattaatcacaacattgtacgaattttattaaaattatt 346  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||||    
T  24118454 gtgtgaattcatcacaacattgtacaaatcttattaaaattatt 24118411  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 13402318 - 13402226
Alignment:
Q  231 aggttttaaataacgctcgaggtcgcgt-taagaattttgtgatttcggttgttacggattgccattgttgcggtgtgaattaatcacaacatt 323  Q
    |||||| |||||||| ||| |||||||| ||||| ||| |||||||| | |||||||||||||  |||| ||||||||||||||||||||||||    
T  13402318 aggtttcaaataacggtcgtggtcgcgtataaga-tttcgtgatttcagctgttacggattgcggttgtcgcggtgtgaattaatcacaacatt 13402226  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 23489967 - 23489999
Alignment:
Q  295 ttgttgcggtgtgaattaatcacaacattgtac 327  Q
    |||||||||||||||||||||||||||||||||    
T  23489967 ttgttgcggtgtgaattaatcacaacattgtac 23489999  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 9457798 - 9457757
Alignment:
Q  283 tacggattgccattgttgcggtgtgaattaatcacaacattg 324  Q
    ||||||||||  ||||||||||||||||||||||||||||||    
T  9457798 tacggattgcggttgttgcggtgtgaattaatcacaacattg 9457757  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 9461895 - 9461854
Alignment:
Q  283 tacggattgccattgttgcggtgtgaattaatcacaacattg 324  Q
    ||||||||||  ||||||||||||||||||||||||||||||    
T  9461895 tacggattgcggttgttgcggtgtgaattaatcacaacattg 9461854  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 26828640 - 26828587
Alignment:
Q  294 attgttgcggtgtgaattaatcacaacattgtacgaattttattaaaattattt 347  Q
    ||||| ||||||| ||||||||||||||||| || |||||||||||| ||||||    
T  26828640 attgtcgcggtgtaaattaatcacaacattgcacaaattttattaaacttattt 26828587  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 14289828 - 14289880
Alignment:
Q  300 gcggtgtgaattaatcacaacattgtacgaattttattaaaattatttgtatt 352  Q
    ||||||||||||||||| |||||||||  ||| ||||||||||||||| ||||    
T  14289828 gcggtgtgaattaatcaaaacattgtataaatgttattaaaattatttatatt 14289880  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 9771953 - 9771913
Alignment:
Q  304 tgtgaattaatcacaacattgtacgaattttattaaaatta 344  Q
    ||||||||||||||||||||| || ||| ||||||||||||    
T  9771953 tgtgaattaatcacaacattgcacaaatgttattaaaatta 9771913  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 347
Target Start/End: Original strand, 32104130 - 32104245
Alignment:
Q  231 aggttttaaataacgctcgaggtcgcgttaagaattttgtgatttcggttgttacggattgccattgttgcggtgtgaattaatcacaacattgtacgaa 330  Q
    ||||||||||||  ||||||||| | || ||| ||||||||||||| | | ||||||||||   | || ||||||| ||||||||||||||| | || ||    
T  32104130 aggttttaaatagtgctcgaggttgtgt-aaggattttgtgatttcagctattacggattgttgtagtcgcggtgtaaattaatcacaacatggcacaaa 32104228  T
Q  331 ttttattaaaattattt 347  Q
      |||||||||||||||    
T  32104229 cgttattaaaattattt 32104245  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 42237563 - 42237615
Alignment:
Q  300 gcggtgtgaattaatcacaacattgtacgaattttattaaaattatttgtatt 352  Q
    |||||||||||||| |||||||||| || ||| ||||||||||||||| ||||    
T  42237563 gcggtgtgaattaaccacaacattgcacaaatcttattaaaattatttatatt 42237615  T

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Target: scaffold0472 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 11808 - 11853
Alignment:
Q  302 ggtgtgaattaatcacaacattgtacgaattttattaaaattattt 347  Q
    |||||||||||| |||||||||| || ||| |||||||||||||||    
T  11808 ggtgtgaattaaccacaacattgcacaaatcttattaaaattattt 11853  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 25968183 - 25968142
Alignment:
Q  283 tacggattgccattgttgcggtgtgaattaatcacaacattg 324  Q
    ||||||||||  |||| |||||||||||||||||||||||||    
T  25968183 tacggattgcggttgtcgcggtgtgaattaatcacaacattg 25968142  T

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