View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11457_low_9 (Length: 378)
Name: NF11457_low_9
Description: NF11457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11457_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 245 - 377
Target Start/End: Complemental strand, 44515692 - 44515560
Alignment:
| Q |
245 |
tgtcttccactcatttgcataagaaaccacaggtagtccagtatatttgaaggccttttcagtcggaatgccattatctcttatagtacgaagtacttcc |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44515692 |
tgtcttccactcatttgcataagaaaccacaggtagtccagtatatttgaaggccttttcagtcggaatgccactatctcttatagtacgaagtacttcc |
44515593 |
T |
|
| Q |
345 |
tcacaagtaaagccaccaaccacatcctcaatg |
377 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
|
|
| T |
44515592 |
tcgcaagtaaagccaccaaccacatcctcaatg |
44515560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 44515791 - 44515685
Alignment:
| Q |
1 |
acatcactgaaaattcaagt--tcatatcgcctagacagccctcgaattcagacaccaattaaagacataaattaaaagttatatttaa-ggtttacctt |
97 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44515791 |
acatcactgaaaattcaagtcttcatatcacctagacaaccctcggattcagacaccaattaaagacataaattaaaagttatatttaatggtttacctt |
44515692 |
T |
|
| Q |
98 |
gtcttcc |
104 |
Q |
| |
|
||||||| |
|
|
| T |
44515691 |
gtcttcc |
44515685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University