View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11458_high_1 (Length: 561)
Name: NF11458_high_1
Description: NF11458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11458_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 17 - 551
Target Start/End: Original strand, 19856664 - 19857198
Alignment:
| Q |
17 |
caatcatatcagaatcactgagcttgtctttttcctccaaatcaagcaaaacgtcaacaaaatcaccaactatagcccttccttcagacattctcttcat |
116 |
Q |
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| T |
19856664 |
caatcatatcagaatcactgagcttgtctttttcctccaaatcaagcaaaacgtcaacaaaatcaccaactatagcccttccttcagacattctcttcat |
19856763 |
T |
|
| Q |
117 |
cttatgctcctctattatctttccaacaaaagtattaacctttttcaccaaagctctacaccttttcctaacaccctgcaaatccaaccaacccagaaga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19856764 |
cttatgctcctctattatctttccaacaaaagtattaacctttgtcaccaaagctctacaccttttcttaacaccctgcaaatccaaccaacccagaaga |
19856863 |
T |
|
| Q |
217 |
ggaaaatgatcactccagttaaaaacacccaacagctcataaccttcactcaccaactcctcaagctcaaaaccatcaccatcaaagaaatcataacatt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19856864 |
ggaaaatgatcactccagttaaaaacacccaacagctcatacccttcactcaccaactcctcaagctcaacaccatcaccatcaaagaaatcataacatt |
19856963 |
T |
|
| Q |
317 |
ttccaaacacagtcatcatcacattattaagtgaaccaaaatgaagaacttttttcacctcaacactacccatatcacccatcaaaaacttaatcctctc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19856964 |
ttccaaacacagtcatcatcacattattaagtgaaccaaaatgaagaacttttttcacctcaacactacccatatcacccatcaaaaacttaatcctctc |
19857063 |
T |
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| Q |
417 |
aaccattttcaaaccaacctcactcctaaaaccttcaaacccattaatcctcctaggacaaaacaaatgggttgaagaaatcctcctcaaattcctccag |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19857064 |
caccattttcaaaccaacctcactcctaaaaccttcaaacccattaatcctcctaggacaaaacaaatgggttgaagaaatcctcctcaaattcctccag |
19857163 |
T |
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| Q |
517 |
tactctccatatggagcaaaccccattgccctatg |
551 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
19857164 |
tactctccatacggagcaaaccccattgccctatg |
19857198 |
T |
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