View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11458_high_10 (Length: 252)
Name: NF11458_high_10
Description: NF11458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11458_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 23026189 - 23026309
Alignment:
| Q |
17 |
caaagggtttaatgtaacaggatcagtatgtgatatattatttcatgaacaacgcaagaaactaatggaaactgtttcttctatctttcatggaaagctc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23026189 |
caaagggtttaatgtaacaggatcagtatgtgatatactatttcatgaacaacgcaagaaactaatggaaactgtttcttctatctttcaaggaaagctc |
23026288 |
T |
|
| Q |
117 |
aatattctagtacgatccatt |
137 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23026289 |
aatattctagtacgatccatt |
23026309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 23034997 - 23035117
Alignment:
| Q |
17 |
caaagggtttaatgtaacaggatcagtatgtgatatattatttcatgaacaacgcaagaaactaatggaaactgtttcttctatctttcatggaaagctc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23034997 |
caaagggtttaatgtaacaggatcagtatgtgatatattatttcatgaacaacgcaaaagattaatggaaactgtttcttctatctttcatggaaagctc |
23035096 |
T |
|
| Q |
117 |
aatattctagtacgatccatt |
137 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23035097 |
aatattctagtacgatccatt |
23035117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 23091379 - 23091462
Alignment:
| Q |
45 |
tgtgatatattatttcatgaacaacgcaagaaactaatggaaactgtttcttctatctttcatggaaagctcaatattctagta |
128 |
Q |
| |
|
|||||| ||||||||| ||||||||| | ||| | |||||||||||| |||| | |||||| ||||| ||||||||||||||| |
|
|
| T |
23091379 |
tgtgatttattatttcgtgaacaacgtgaaaaattgatggaaactgttgcttcaacctttcaaggaaaactcaatattctagta |
23091462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 23056655 - 23056710
Alignment:
| Q |
78 |
ctaatggaaactgtttcttctatctttcatggaaagctcaatattctagtacgatc |
133 |
Q |
| |
|
|||||||||| |||| |||| |||||||| ||||| ||||||||||||||| |||| |
|
|
| T |
23056655 |
ctaatggaaaatgttgcttcaatctttcaaggaaaactcaatattctagtaagatc |
23056710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 23063829 - 23063912
Alignment:
| Q |
45 |
tgtgatatattatttcatgaacaacgcaagaaactaatggaaactgtttcttctatctttcatggaaagctcaatattctagta |
128 |
Q |
| |
|
|||||| ||||||||||||| ||||| | || | |||||||| ||| |||| |||||| ||||||| ||||||||||||||| |
|
|
| T |
23063829 |
tgtgatttattatttcatgaccaacgtcaaaagttgatggaaaccgttgcttcgatctttgatggaaaactcaatattctagta |
23063912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University