View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11458_low_1 (Length: 561)
Name: NF11458_low_1
Description: NF11458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11458_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 17 - 551
Target Start/End: Original strand, 19856664 - 19857198
Alignment:
| Q |
17 |
caatcatatcagaatcactgagcttgtctttttcctccaaatcaagcaaaacgtcaacaaaatcaccaactatagcccttccttcagacattctcttcat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19856664 |
caatcatatcagaatcactgagcttgtctttttcctccaaatcaagcaaaacgtcaacaaaatcaccaactatagcccttccttcagacattctcttcat |
19856763 |
T |
|
| Q |
117 |
cttatgctcctctattatctttccaacaaaagtattaacctttttcaccaaagctctacaccttttcctaacaccctgcaaatccaaccaacccagaaga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19856764 |
cttatgctcctctattatctttccaacaaaagtattaacctttgtcaccaaagctctacaccttttcttaacaccctgcaaatccaaccaacccagaaga |
19856863 |
T |
|
| Q |
217 |
ggaaaatgatcactccagttaaaaacacccaacagctcataaccttcactcaccaactcctcaagctcaaaaccatcaccatcaaagaaatcataacatt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19856864 |
ggaaaatgatcactccagttaaaaacacccaacagctcatacccttcactcaccaactcctcaagctcaacaccatcaccatcaaagaaatcataacatt |
19856963 |
T |
|
| Q |
317 |
ttccaaacacagtcatcatcacattattaagtgaaccaaaatgaagaacttttttcacctcaacactacccatatcacccatcaaaaacttaatcctctc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19856964 |
ttccaaacacagtcatcatcacattattaagtgaaccaaaatgaagaacttttttcacctcaacactacccatatcacccatcaaaaacttaatcctctc |
19857063 |
T |
|
| Q |
417 |
aaccattttcaaaccaacctcactcctaaaaccttcaaacccattaatcctcctaggacaaaacaaatgggttgaagaaatcctcctcaaattcctccag |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19857064 |
caccattttcaaaccaacctcactcctaaaaccttcaaacccattaatcctcctaggacaaaacaaatgggttgaagaaatcctcctcaaattcctccag |
19857163 |
T |
|
| Q |
517 |
tactctccatatggagcaaaccccattgccctatg |
551 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19857164 |
tactctccatacggagcaaaccccattgccctatg |
19857198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University