View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11458_low_10 (Length: 254)

Name: NF11458_low_10
Description: NF11458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11458_low_10
NF11458_low_10
[»] chr5 (10 HSPs)
chr5 (16-239)||(13447078-13447301)
chr5 (16-239)||(13419527-13419750)
chr5 (16-239)||(13426418-13426641)
chr5 (21-238)||(13413183-13413400)
chr5 (16-240)||(13388997-13389221)
chr5 (16-128)||(13385176-13385288)
chr5 (18-127)||(13454143-13454252)
chr5 (181-235)||(13454035-13454089)
chr5 (174-240)||(13393562-13393628)
chr5 (16-89)||(13393404-13393477)
[»] chr4 (2 HSPs)
chr4 (161-240)||(47601348-47601427)
chr4 (18-58)||(47601530-47601570)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 13447301 - 13447078
Alignment:
Q  16 aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13447301 aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgcgaaaattgtgccgacgatat 13447202  T
Q  116 tgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447201 tgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgag 13447102  T
Q  216 cactttgtgattcgcattcctgat 239  Q
    ||||||||||||||||||||||||    
T  13447101 cactttgtgattcgcattcctgat 13447078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 13419750 - 13419527
Alignment:
Q  16 aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatat 115  Q
    |||| |||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||  |||||||||| |||||| |    
T  13419750 aggttggaagcaaagtagaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatct 13419651  T
Q  116 tgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgag 215  Q
    ||||||||||||| | | || |||    ||||    ||  |||| ||||||||||||  |||| |||||||||| |||||||||||||||||||||||||    
T  13419650 tgagaattactgcccaacatttacagtcacatgtggtgcaaagtatcgtgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgag 13419551  T
Q  216 cactttgtgattcgcattcctgat 239  Q
    ||||||||||||||||||||||||    
T  13419550 cactttgtgattcgcattcctgat 13419527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 13426641 - 13426418
Alignment:
Q  16 aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatat 115  Q
    |||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| || ||| |    
T  13426641 aggttggaagcaaagtagaaaagtttaaagttggagacaaagtaggagtgggatacatggttgattcatgtcgttcatgcgaaaattgtgcggaagatct 13426542  T
Q  116 tgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgag 215  Q
    ||||||||||||| || || | ||    ||||    || ||||| |||||||||||   |||| ||||||||||  |||||||||||||||||||| |||    
T  13426541 tgagaattactgcccccaacaaacagttacatgtggtgctaagtatcgtgatggcagcgtcacatatggaggttattccgactcaatggttgcagatgag 13426442  T
Q  216 cactttgtgattcgcattcctgat 239  Q
    ||||||||||||||||||||||||    
T  13426441 cactttgtgattcgcattcctgat 13426418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 13413400 - 13413183
Alignment:
Q  21 ggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgaga 120  Q
    |||||||||||  | |||||||||||||||||||||||||| || || ||| || ||||||||||||| || ||  || |||||   ||| || ||||||    
T  13413400 ggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttgattgattcatgtcgatcatgccaagattgtaatgacaatcttgaga 13413301  T
Q  121 attactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactt 220  Q
    |||||||| |||||| |      ||||    ||  |||| ||||||||| ||  |||| |||||||||| ||||||||||||||||||||||||||||||    
T  13413300 attactgccccaaatttgtagtcacatgtggtgccaagtatcgtgatggaaccgtcacttatggaggttactccgactcaatggttgcagacgagcactt 13413201  T
Q  221 tgtgattcgcattcctga 238  Q
    ||||||||||||||||||    
T  13413200 tgtgattcgcattcctga 13413183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 13388997 - 13389221
Alignment:
Q  16 aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatat 115  Q
    ||||||||||||||||| ||||||| || ||||||||||||||||| || || |||||||||||||||||||| || ||| |||||||||  ||| || |    
T  13388997 aggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacatggttgattcatgtcgatcatgtcaaaattgtgttgacaatct 13389096  T
Q  116 tgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgag 215  Q
    ||| ||||||||  ||| || ||||   ||||    ||  |||| ||| ||||| || | ||| ||||||||||  || |||||| |||||||||| |||    
T  13389097 tgaaaattactgtcccacatttactttcacatgtggtgccaagtatcgcgatggaacgagcacatatggaggttattctgactcattggttgcagatgag 13389196  T
Q  216 cactttgtgattcgcattcctgatg 240  Q
     |||| ||| ||| |||||||||||    
T  13389197 aacttcgtggttcacattcctgatg 13389221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 13385176 - 13385288
Alignment:
Q  16 aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatat 115  Q
    ||||||||||||||||| ||||||| || ||||||||||||||||| || || |||||  ||||||||||||| || ||| |||||||||  ||| || |    
T  13385176 aggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacataattgattcatgtcgatcgtgtcaaaattgtgttgacaatct 13385275  T
Q  116 tgagaattactgc 128  Q
    ||| |||||||||    
T  13385276 tgaaaattactgc 13385288  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 13454252 - 13454143
Alignment:
Q  18 gtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattg 117  Q
    |||||||||||||| |||||||| ||||||||||||| |||||| ||||||| | |||||||||| ||||  || ||| |||||||||  ||  || |||    
T  13454252 gtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgttgataatcttg 13454153  T
Q  118 agaattactg 127  Q
    ||||||||||    
T  13454152 agaattactg 13454143  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 13454089 - 13454035
Alignment:
Q  181 atggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcc 235  Q
    ||||||| ||||| |||||||||||| | ||||||||||||||| ||||||||||    
T  13454089 atggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattcc 13454035  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 240
Target Start/End: Original strand, 13393562 - 13393628
Alignment:
Q  174 atcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatg 240  Q
    ||||| |||||||| | ||| ||||||||||||||||| ||||||||| |  ||| |||||||||||    
T  13393562 atcacatatggagggtactctgactcaatggttgcagatgagcactttatagttcacattcctgatg 13393628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 13393404 - 13393477
Alignment:
Q  16 aggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgt 89  Q
    |||| |||||||||||| | ||||| ||| ||||||||||||| || ||||||| | | |||||||| ||||||    
T  13393404 aggtaggaagcaaagtagagaagttcaaaattggagacaaagtgggtgtgggatgcttagttgattcgtgtcgt 13393477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 47601427 - 47601348
Alignment:
Q  161 tcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatg 240  Q
    |||||||||||| | ||| || ||||||| ||| ||||||||||||| |||||||||||||||| ||| |||||| ||||    
T  47601427 tcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcccgatg 47601348  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 47601570 - 47601530
Alignment:
Q  18 gtgggaagcaaagtaaaaaagtttaaagttggagacaaagt 58  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  47601570 gtgggaagcaaagtagaaaagttcaaagttggagacaaagt 47601530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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