View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11458_low_12 (Length: 249)
Name: NF11458_low_12
Description: NF11458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11458_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 13303156 - 13302919
Alignment:
| Q |
1 |
atttctcaaaggtacaagttgtatctcatgttgttttgaaaccataaggttatggatggtcacacaattggataaaaatattattttttgggatttggct |
100 |
Q |
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| T |
13303156 |
atttctcaaaggtacaagttgtatctcgtgttgttttgaaaccataaggttatggatggtcacacaattggataaaaaaaatattttttgggatttggct |
13303057 |
T |
|
| Q |
101 |
tattagaaagataacctcttgaggcacaatctcgatgttatgtacattgagaaaagtgtctttgataccatacttaacacaatgttgaatgttaaaggta |
200 |
Q |
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| T |
13303056 |
tattagaaagataacctcttgaggtacaatctcgatgttatgcacattgagaaaagtgtctttgataccatatttaacacgatgatgaatgttaaaggta |
13302957 |
T |
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| Q |
201 |
aaagaagtcattctagatatgttgattgatcgatctct |
238 |
Q |
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| T |
13302956 |
aaagaagtcattctagatatgttgattaatctatctct |
13302919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 13300408 - 13300371
Alignment:
| Q |
190 |
tgttaaaggtaaaagaagtcattctagatatgttgatt |
227 |
Q |
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| T |
13300408 |
tgttaaaggtaaaagaagtcattctagatatgttgatt |
13300371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 1935222 - 1935151
Alignment:
| Q |
82 |
tattttttgggatttggcttattagaaagataacctcttgaggcacaatctcgatgttatgtacattgagaa |
153 |
Q |
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| T |
1935222 |
tattttttgggatttgctatattggaaagataatctattaaggcacaatctcgatgtcatgcatattgagaa |
1935151 |
T |
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