View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11458_low_4 (Length: 348)
Name: NF11458_low_4
Description: NF11458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11458_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 4489642 - 4489418
Alignment:
| Q |
13 |
gagatgaaactatgaattcagacaacaaagttatatccatcggggtgatcattgatggtgattctcgtattgggaaagaacaagaagtagccatggacat |
112 |
Q |
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| T |
4489642 |
gagatgaaactatgaattcagacaacaaagttatatccatcggggtgatcattgatggtgattctcgtattgggaaagaacaagaagtagccatggacat |
4489543 |
T |
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| Q |
113 |
tgcagcccaaagttacaacaacacttcaaagaactacaagttagctctctacttcaagaactccacaaaggataccctcaaggccatcagaattggttag |
212 |
Q |
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| T |
4489542 |
tgcagcccaaagttacaacaacacttcaaagaactacaagttagctctctacttcaagaactccacaaaggataccctcaaggccatcaaaattggttag |
4489443 |
T |
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| Q |
213 |
tatatctactattttctgagaaaaa |
237 |
Q |
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|||||||| ||||| |||||||||| |
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| T |
4489442 |
tatatctaatatttgctgagaaaaa |
4489418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 42 - 237
Target Start/End: Complemental strand, 4485444 - 4485251
Alignment:
| Q |
42 |
gttatatccatcggggtgatcattgatggtgattctcgtattgggaaagaacaagaagtagccatggacattgcagcccaaagttacaacaacacttcaa |
141 |
Q |
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| T |
4485444 |
gttatatccattggtgtgatcgttgatgttaactctcgtattgggaaagaacaagaactagc---ggaaattgcatcccaaagttacagcaacacttcaa |
4485348 |
T |
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| Q |
142 |
agaactacaagttagctctctacttcaagaactccacaaaggataccctcaaggccatcagaattggttagtatatctacta-ttttctgagaaaaa |
237 |
Q |
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| T |
4485347 |
agaactacaagttggttctctattttcagaattccaccaaggataccctcaaggccatcaaaattggttagtatatctaatatttttctgagaaaaa |
4485251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 142
Target Start/End: Original strand, 34604492 - 34604600
Alignment:
| Q |
34 |
acaacaaagttatatccatcggggtgatcattgatggtgattctcgtattgggaaagaacaagaagtagccatggacattgcagcccaaagttacaacaa |
133 |
Q |
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|||||||||||||||| || || || || ||||||| | | ||| | |||||||||||||| |||||||||||| |||||||| |||| |||||| || |
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| T |
34604492 |
acaacaaagttatatctataggtgtaataattgatgttaactctagagttgggaaagaacaaagagtagccatggatattgcagctcaaaattacaataa |
34604591 |
T |
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| Q |
134 |
cacttcaaa |
142 |
Q |
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| T |
34604592 |
cacttcaaa |
34604600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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