View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11458_low_5 (Length: 311)
Name: NF11458_low_5
Description: NF11458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11458_low_5 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 13651040 - 13651335
Alignment:
| Q |
1 |
tttcctactaactggaccattactattagtgatagccccatattttcccatttatattggaactgcggtgctcaacattgaagttctatcacatattggt |
100 |
Q |
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| T |
13651040 |
tttcttactaactggaccattactattagtgatagccccatattttcccatttatatcggaactgcggtgctcaacattgaagttctatcgcatattggt |
13651139 |
T |
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| Q |
101 |
gtcatatactatgcatttatcagtggtttggagattgacttgaatagcattttacatgttaaaaagaaagatgcaaccattgcgatttccgggatcatct |
200 |
Q |
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| T |
13651140 |
gtcatatactatgcatttatcagtggtttggagatggacttgaatagcattttacatgttaaaaagaaagatgcaaccattgcgatttccgggatcatct |
13651239 |
T |
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| Q |
201 |
ttccgatggtaatggggccaattttatacaatctacatcgatacttttatggcaatgacgatggacctaaacttgaagaaagtacaatgaatgttt |
296 |
Q |
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| T |
13651240 |
ttccgatggtaatggggccaattttatacaatctacatcgatacttttatggcaatggtgatggacctaaactcgaagaaagtacaatgaatgttt |
13651335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 72 - 277
Target Start/End: Original strand, 13658600 - 13658805
Alignment:
| Q |
72 |
tcaacattgaagttctatcacatattggtgtcatatactatgcatttatcagtggtttggagattgacttgaatagcattttacatgttaaaaagaaaga |
171 |
Q |
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| T |
13658600 |
tcaacgttgaagttctatcacatattggtgtcatatactacacatttatcagtggtttggagatggacttgaatggcattttacatgttaaaaagaaagc |
13658699 |
T |
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| Q |
172 |
tgcaaccattgcgatttccgggatcatctttccgatggtaatggggccaattttatacaatctacatcgatacttttatggcaatgacgatggacctaaa |
271 |
Q |
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| T |
13658700 |
tgcaaccattgcgatttccgggatcatctttccaatggtgatgggaccaccgttatacattctacatcgaaaattttatggaaatggtgatggatctaaa |
13658799 |
T |
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| Q |
272 |
cttgaa |
277 |
Q |
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| T |
13658800 |
cttgaa |
13658805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 80 - 296
Target Start/End: Complemental strand, 439670 - 439454
Alignment:
| Q |
80 |
gaagttctatcacatattggtgtcatatactatgcatttatcagtggtttggagattgacttgaatagcattttacatgttaaaaagaaagatgcaacca |
179 |
Q |
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| T |
439670 |
gaagttatatcaactattggtgttatatattatgcattcctaagtggtttggaggtgaacttgaataccattttacatgttaaaaagaaagctgcaacta |
439571 |
T |
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| Q |
180 |
ttgcgatttccgggatcatctttccgatggtaatggggccaattttatacaatctacatcgatacttttatggcaatgacgatggacctaaacttgaaga |
279 |
Q |
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| T |
439570 |
ttgcaatttctgggataatttttccaatggtgatgggaccagctttataccttctacatcgaaaattttatggcaagggtgatggatctaatcttgaaga |
439471 |
T |
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| Q |
280 |
aagtacaatgaatgttt |
296 |
Q |
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| T |
439470 |
aagtacaataaatgttt |
439454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 72 - 287
Target Start/End: Original strand, 28607225 - 28607440
Alignment:
| Q |
72 |
tcaacattgaagttctatcacatattggtgtcatatactatgcatttatcagtggtttggagattgacttgaatagcattttacatgttaaaaagaaaga |
171 |
Q |
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| T |
28607225 |
tcaacattgaagttctatcaaatattggtgtcatatactatgcattcctaagtggtttagagatgaacttgaataccattttacatgttaaaaagaaatc |
28607324 |
T |
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| Q |
172 |
tgcaaccattgcgatttccgggatcatctttccgatggtaatggggccaattttatacaatctacatcgatacttttatggcaatgacgatggacctaaa |
271 |
Q |
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| T |
28607325 |
tgcaactattgcaatttttggaatcatttttccaatggtgatgggaccggctttataccttctacatcgaaatttttatggaaagggtgatggatctgaa |
28607424 |
T |
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| Q |
272 |
cttgaagaaagtacaa |
287 |
Q |
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| T |
28607425 |
cttgaagaaaatacaa |
28607440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 7590317 - 7590188
Alignment:
| Q |
71 |
ctcaacattgaagttctatcacatattggtgtcatatactatgcatttatcagtggtttggagattgacttgaatagcattttacatgttaaaaagaaag |
170 |
Q |
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| T |
7590317 |
ctcaacgttgaagttctagcacatattggtgtcatatactatgcattcctcactg-ttcggaggtgaacttgaataccattttacatgttaaaaagaaag |
7590219 |
T |
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| Q |
171 |
atgcaaccattgcgatttccgggatcatctt |
201 |
Q |
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| T |
7590218 |
ctgcaaccattgcgattttcggaatcatctt |
7590188 |
T |
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