View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11458_low_8 (Length: 301)

Name: NF11458_low_8
Description: NF11458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11458_low_8
NF11458_low_8
[»] chr2 (1 HSPs)
chr2 (4-291)||(9114804-9115094)
[»] chr8 (1 HSPs)
chr8 (1-91)||(35661446-35661535)
[»] chr3 (2 HSPs)
chr3 (2-91)||(46170485-46170574)
chr3 (3-79)||(39018958-39019034)
[»] chr4 (3 HSPs)
chr4 (2-89)||(41702936-41703023)
chr4 (1-91)||(4513690-4513780)
chr4 (24-88)||(23613137-23613201)
[»] chr5 (1 HSPs)
chr5 (1-91)||(42943512-42943602)
[»] chr1 (1 HSPs)
chr1 (7-88)||(29525541-29525622)
[»] chr6 (3 HSPs)
chr6 (1-88)||(10040449-10040536)
chr6 (1-88)||(34392123-34392210)
chr6 (20-88)||(34480905-34480973)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 291
Target Start/End: Complemental strand, 9115094 - 9114804
Alignment:
Q  4 ttaaaataaagttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaactatactttgccattgggatgtca 103  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  9115094 ttaaaataaatttataatatatcaatggtttatattgaggtggtgtaagttggagtaatgaatttgatggtccaaactatactttgccattgggatgtca 9114995  T
Q  104 ttttgttgtcgtgtgttgtttttgcactttaatattcacttnnnnnnnnn---gaataatttaaattagatttaaatgaatgtttagtccgcataaatat 200  Q
    | ||| ||||||||||||||||||||||||||| |||||||            |||||||||||||||||||||||| ||||||||||||||||||||||    
T  9114994 tattgctgtcgtgtgttgtttttgcactttaatgttcacttaaaaaaaaaaaagaataatttaaattagatttaaataaatgtttagtccgcataaatat 9114895  T
Q  201 atcaagtaagagttatattttcgggagaaaaaagggaacaatgtgttctattttaacatgaatattatttatttatcatttgtgctctgtg 291  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||    
T  9114894 atcaagtaagagttatattttggggagaaaaaaaggaacaatgtgctatattttaacatgaatattatttatttatcatttgtgctatgtg 9114804  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 35661535 - 35661446
Alignment:
Q  1 ccgttaaaataaagttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaactatactttgcc 91  Q
    ||||||||||||| |||| |||||||||||| |||||||| |||||||||||||||| ||||  ||||| |||||||||||||||||||||    
T  35661535 ccgttaaaataaatttataatatatcaatggcttatattg-ggtggtgtaagttggagcaatgtatttggtggtccaaactatactttgcc 35661446  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 46170485 - 46170574
Alignment:
Q  2 cgttaaaataaagttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaactatactttgcc 91  Q
    |||||||||||| |||| ||||||||||||||||||||||  || ||||||||||| ||||  ||||||| |||||||||||||||||||    
T  46170485 cgttaaaataaatttataatatatcaatggtttatattgaaatgatgtaagttggagcaatgtatttgatagtccaaactatactttgcc 46170574  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 39018958 - 39019034
Alignment:
Q  3 gttaaaataaagttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaa 79  Q
    ||||||||||| |||  ||||||||||| |||| ||| | ||||||||||||||| ||||  ||||| |||||||||    
T  39018958 gttaaaataaatttaaaatatatcaatgatttagattaaagtggtgtaagttggaccaatgtatttggtggtccaaa 39019034  T

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Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 41702936 - 41703023
Alignment:
Q  2 cgttaaaataaagttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaactatactttg 89  Q
    ||||| |||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||  ||||  |||||||||||||||||||    
T  41702936 cgttagaataaatttataatatgtcaatggcttatattgaggtggtgtaagttggaacaatgtatttagtggtccaaactatactttg 41703023  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 4513690 - 4513780
Alignment:
Q  1 ccgttaaaataaagttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaactatactttgcc 91  Q
    |||||| |||||| |||| |||||||||||  ||||||||||||||||||||||||| ||||  ||||| |||| ||||||||||||||||    
T  4513690 ccgttagaataaatttataatatatcaatgacttatattgaggtggtgtaagttggagcaatgtatttggtggttcaaactatactttgcc 4513780  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 23613201 - 23613137
Alignment:
Q  24 atcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaactatacttt 88  Q
    |||||||  ||||||||||||||||||||||||| ||||  ||||| ||||||||||||||||||    
T  23613201 atcaatgacttatattgaggtggtgtaagttggagcaatctatttggtggtccaaactatacttt 23613137  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 42943602 - 42943512
Alignment:
Q  1 ccgttaaaataaagttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaactatactttgcc 91  Q
    ||||||||||||| |||| |||||| ||||| ||||||||||||||||||||||||| || |  ||||| | |||||||||||||||||||    
T  42943602 ccgttaaaataaatttataatatattaatggcttatattgaggtggtgtaagttggagcattgtatttggtcgtccaaactatactttgcc 42943512  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 29525622 - 29525541
Alignment:
Q  7 aaataaagttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaactatacttt 88  Q
    ||||||| |||| ||||||||||| ||||||||||||| |||||| ||||| ||||  |||||||||| |||||||||||||    
T  29525622 aaataaatttatcatatatcaatgatttatattgaggtagtgtaaattggagcaatgtatttgatggttcaaactatacttt 29525541  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 10040536 - 10040449
Alignment:
Q  1 ccgttaaaataaagttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaactatacttt 88  Q
    |||||| |||||| | || |||||||||||  |||| |||||||||||||||||||| ||||  ||||| ||||||||||||||||||    
T  10040536 ccgttagaataaattaataatatatcaatgacttattttgaggtggtgtaagttggagcaatctatttggtggtccaaactatacttt 10040449  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 34392210 - 34392123
Alignment:
Q  1 ccgttaaaataaagttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaactatacttt 88  Q
    |||||| |||||| |||  |||||||||||  ||||||||| |||||||||||| || ||||| ||||| |||||||||||| |||||    
T  34392210 ccgttacaataaatttaaaatatatcaatgacttatattgaagtggtgtaagttagagcaatatatttggtggtccaaactaaacttt 34392123  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 34480905 - 34480973
Alignment:
Q  20 atatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaactatacttt 88  Q
    |||||| ||||  ||||||||| |||||||||||||||| |||  ||||||| |||||||||| |||||    
T  34480905 atatataaatgacttatattgaagtggtgtaagttggaagaatgtatttgatagtccaaactaaacttt 34480973  T

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