View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11458_low_9 (Length: 255)
Name: NF11458_low_9
Description: NF11458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11458_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 28 - 239
Target Start/End: Complemental strand, 13650614 - 13650403
Alignment:
| Q |
28 |
actaactcgtaaatttatgtacttacagcaacatgtgaaataatccgaggttgatgaagaggttttaggacggagaagatgagaagcgacaataataccg |
127 |
Q |
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| T |
13650614 |
actaactcaaaaatttatgtacttacagcaacatgtgaaataatccgaggttgatgaagaggttttaggacggagaagatgagaagcgacaataataccg |
13650515 |
T |
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| Q |
128 |
taaatgcaattgaagttgcaatttccggtaactcgcttttaaggacatttcgagtttgccatagatgactgggatcaaacacatttacatcataacatat |
227 |
Q |
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| T |
13650514 |
taaatgcaattgaagttgcaatttccggtaactcgcttttaaggacattttgagtttgccatagatgactgggatcaaacacatttacatcatagcatat |
13650415 |
T |
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| Q |
228 |
aggtgcgttctt |
239 |
Q |
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|||||| ||||| |
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| T |
13650414 |
aggtgcattctt |
13650403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 228
Target Start/End: Complemental strand, 13656579 - 13656388
Alignment:
| Q |
37 |
taaatttatgtacttacagcaacatgtgaaataatccgaggttgatgaagaggttttaggacggagaagatgagaagcgacaataataccgtaaatgcaa |
136 |
Q |
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||||||||||||||||||| | || |||||| || ||| ||||||||||||||| | || | |||||| || | | ||||||||||| |||| |||| |
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| T |
13656579 |
taaatttatgtacttacagtgatatatgaaatcatacgactttgatgaagaggtttaaagatgaagaagacgatacgagacaataatacgataaaggcaa |
13656480 |
T |
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| Q |
137 |
ttgaagttgcaatttccggtaactcgcttttaaggacatttcgagtttgccatagatgactgggatcaaacacatttacatcataacatata |
228 |
Q |
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| T |
13656479 |
ttgcagtcgcaatttcaggtagctcgcctttaaggacatttcgagtttgccataaatgtttgggatcaaaaacatttaccttatagcatata |
13656388 |
T |
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