View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11459_high_11 (Length: 361)
Name: NF11459_high_11
Description: NF11459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11459_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 1180697 - 1180352
Alignment:
| Q |
1 |
caaagttatatattcaatcaaaggacaaaaagagatgagttggctaattgcatgttcatctccaaaaagtacacgcgttagtgacaattccctcaaagag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1180697 |
caaagttatatattcaatcaaaggacaaaaagagatgagttggttaattgcatgttcatctccaaaaagtacacgcgttagtgacaattccctcaaagag |
1180598 |
T |
|
| Q |
101 |
aaaaacttgatcgaataattcatgaatactggatcaatcttgatattcccctgcaacaccaattttgtaagtgatttggcttcaattacactgattggca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1180597 |
aaaaacttgatcgaataattcatgaatactggatcaatcttgatattcccctgcaacaccaactttgtaagtgatttggcttcaattacactgattggca |
1180498 |
T |
|
| Q |
201 |
agacatggtattgctcctgaccttccagtatctgttgggaatactgtattacctcaacaccacattcacaagccaatttcaaccaattatcaacatcctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1180497 |
agacatggtattgctcctgaccttccagtatctgttgggaatactgtattacctcaacaccacattcacaagccaatttcaaccaattatcaacatcctt |
1180398 |
T |
|
| Q |
301 |
tgacatgtacctaactacaaaaccattcaaattgagcctaaatttt |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1180397 |
tgacatgtacctaactacaaaaccattcaaattgagcctaaatttt |
1180352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 1186062 - 1185861
Alignment:
| Q |
1 |
caaagttatatattcaatcaaaggacaaaaagagatgagttggctaattgcatgttcatctccaaaaagtacacgcgttagtgacaattccctcaaagag |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||| | ||||||||| || ||||||||||||||||||| ||| |
|
|
| T |
1186062 |
caaagttatatattcaatcaaatgacaaaaagagatgaggtggttgattgcatgttcatctaccaaaagtacatgccttagtgacaattccctcaatgag |
1185963 |
T |
|
| Q |
101 |
aaaaacttgatcgaataattcatgaatactggatcaatcttgatattcccctgcaacaccaattttgtaagtgatttggcttcaattacactgattggca |
200 |
Q |
| |
|
|||||||| || |||| |||| |||||| |||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
1185962 |
aaaaactttattgaatgattcgtgaatattggatcaatctttataaacccctccaacaccaactttgtaagtgatttggcttcaatgacacacattggca |
1185863 |
T |
|
| Q |
201 |
ag |
202 |
Q |
| |
|
|| |
|
|
| T |
1185862 |
ag |
1185861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 235 - 324
Target Start/End: Complemental strand, 1196805 - 1196716
Alignment:
| Q |
235 |
ttgggaatactgtattacctcaacaccacattcacaagccaatttcaaccaattatcaacatcctttgacatgtacctaactacaaaacc |
324 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| |
|
|
| T |
1196805 |
ttgggaatactctattacctcaacaccacattcacaagccaatttcaaccaaatatcaacatcctttgacatgtacttaggtacaaaacc |
1196716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 10202870 - 10202788
Alignment:
| Q |
63 |
caaaaagtacacgcgttagtgacaattccctcaaagagaaaaacttgatcgaataattcatgaatactggatcaatcttgata |
145 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||||||| |||||||||||||| ||||||||||||| || |||||||||||||||| |
|
|
| T |
10202870 |
caaaaagtactcgccttagtgacaataccctcaatgagaaaaacttgattgaataattcatgattattggatcaatcttgata |
10202788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 49610710 - 49610642
Alignment:
| Q |
1 |
caaagttatatattcaatcaaaggacaaaaagagatgagttggctaattgcatgttcatctccaaaaag |
69 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| ||||| || ||||||||| |||| ||| ||||| |
|
|
| T |
49610710 |
caaagttatatgttcaatcaaaggacaacaagaaatgagatgttcaattgcatgctcatttcccaaaag |
49610642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5203791 - 5203730
Alignment:
| Q |
1 |
caaagttatatattcaatcaaaggacaaaaagagatgagttggctaattgcatgttcatctc |
62 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| ||||| || ||||||||||||||||| |
|
|
| T |
5203791 |
caaagttatatgttcaatcaaaggacaacaagaaatgagatgctcaattgcatgttcatctc |
5203730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 5203523 - 5203468
Alignment:
| Q |
254 |
tcaacaccacattcacaagccaatttcaaccaattatcaacatcctttgacatgta |
309 |
Q |
| |
|
|||||||||||||||| || || |||||||||| ||||||||| ||||||||||| |
|
|
| T |
5203523 |
tcaacaccacattcacttgctaacttcaaccaatgatcaacatcttttgacatgta |
5203468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 8553025 - 8553085
Alignment:
| Q |
1 |
caaagttatatattcaatcaaaggacaaaaagagatgagttggctaattgcatgttcatct |
61 |
Q |
| |
|
||||||||||| |||||| ||||||||| |||| ||||| || |||||||||||||||| |
|
|
| T |
8553025 |
caaagttatatgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgttcatct |
8553085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University