View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11459_high_16 (Length: 247)
Name: NF11459_high_16
Description: NF11459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11459_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 38211448 - 38211210
Alignment:
| Q |
1 |
tgttgcatccaaccataatataatgatttggaggattccaaatttatttaaactaaaactaaatgaaagttaagagactaattaacaattttcacgaaaa |
100 |
Q |
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| T |
38211448 |
tgttgcatccaaccataatataatgatttgtaggattcaaaatttatttaaactaaaactaaatgaaagttaagagactaattaacaattttcacgaaaa |
38211349 |
T |
|
| Q |
101 |
gctttccagcttttagatgatatcaagatgctctcgttttggtggcttagggcaaaattcgtcaccttaatttgattgtagttattaaacttggtggctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38211348 |
gctttccagcttttagatgatatcaagatgctctcgttttggtggcttagggcaaaattcgtcaccttaatttgattgtagttattaaacttggtggctt |
38211249 |
T |
|
| Q |
201 |
aactcttttatgtgtttgagcattgactaagccccctat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
38211248 |
aactcttttatgtgtttgagcattgactaagccccctat |
38211210 |
T |
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