View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11459_high_7 (Length: 395)
Name: NF11459_high_7
Description: NF11459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11459_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 3908523 - 3908144
Alignment:
| Q |
18 |
agcagaacttggtgttgaatgaatcacaccttggacacttctgaggttgaggatgagcttgaacaagcttactcatctcacctcttcttccaccatctcc |
117 |
Q |
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| T |
3908523 |
agcagaacttggtgttgaatgaatcacacctaggacacttctgaggttgaggatgagcttgaacaagcttactcatctcacctcttcttccaccatctcc |
3908424 |
T |
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| Q |
118 |
actttcttgctccatctctcagtttttatttgagtgtgcgttttctaaacagagacgtgccatatttataatcaaaaataacaaaacaaaaaccggttgc |
217 |
Q |
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| T |
3908423 |
actttcttgctccatctctcagtttttatttgagtgtgcgttttctaaacagagacgtgccatatttataatcaaaaataagaaaacaaaaaccggttgc |
3908324 |
T |
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| Q |
218 |
tactgctattggttggtttctggtttttcttacgattcaactattaagggaaaagtgtttgaaaagtttgatt-----------ttttgagtctgaatta |
306 |
Q |
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| T |
3908323 |
tactgctattggttggtttctggtttttcttacgatgcaaccattaagggaaaagtgtttgaaaagtttgattttttcggatttttttgagtctgaatta |
3908224 |
T |
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| Q |
307 |
agaaattcttctacttgtctctgcaaaattaatatcaaaatctaccttgaccaaaacaacggcgatcttttaccctttgc |
386 |
Q |
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| T |
3908223 |
agaaattgttctacttgtctctgcaaaattaatatgaaaatctaccttgaccaaaacaacggcgatcttttaccctttgc |
3908144 |
T |
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