View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11459_low_1 (Length: 692)
Name: NF11459_low_1
Description: NF11459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11459_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 250 - 677
Target Start/End: Original strand, 48230150 - 48230577
Alignment:
| Q |
250 |
cttgtggagaagagaggaggaagaggaaggtcttcaagttcaacaccaccacccacttggagacttgttgactttccttcttcccaacaacaacagttcc |
349 |
Q |
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| T |
48230150 |
cttgtggagaagagaggaggaagaggaaggtcttcaagttcaacaccaccacccacttggagacttgttgactttccttcttcccaacaacaacagttcc |
48230249 |
T |
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| Q |
350 |
tcaactttcccacttcaaaaacactctctgcaagaaatctctgtgctaaactctgggaatttcactcccatcaccatgagcatcctccctctcaccaggt |
449 |
Q |
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| T |
48230250 |
tcaactttcccacttcaaaaacactctctgcaagaaatctctgtgctaaactctgggaatttcactcccaccaccatgagcatcctccctctcaccaggt |
48230349 |
T |
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| Q |
450 |
acttttcttgttttgtatccattttcaannnnnnnnnnnnnncatgtataatttgcttatgtactagtttaatcaagatatgctacactttgttcaatca |
549 |
Q |
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| T |
48230350 |
acttttcttgttttgtatccattttcaatttttttattttttcatgtataatttgcttatgtactagtttaatcaagatatgctacactttgttcaatca |
48230449 |
T |
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| Q |
550 |
catgtatattacatggcaatgacatttttggtaaaattattcatgtactaaatttcttcttatctttttgtatactgttttgttttcagatgcctataat |
649 |
Q |
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| T |
48230450 |
catgtatattacatggcaatgacatttttggtaaaattattcatgtactaaatttcttcttatctttttgtatactgttttgttttcagatgcctataat |
48230549 |
T |
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| Q |
650 |
tggaaatttctgtttcagctttaaaagt |
677 |
Q |
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| T |
48230550 |
tggaaatttctgtttcagctttaaaagt |
48230577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 48229923 - 48230055
Alignment:
| Q |
23 |
agtgaagaactattgatgtggctatgtgagaagaaagctgagtttgtaacttacttaacaggttaatattctttctacttcatgacacacggtactctca |
122 |
Q |
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| T |
48229923 |
agtgaagaactattgatgtggctatgtgagaagaaagctgagtttgtaacttacttaacaggttaatattctttctacttcatgacacacggcactctca |
48230022 |
T |
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| Q |
123 |
actttcaaacacaaaacactttgaatgtttttt |
155 |
Q |
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| T |
48230023 |
actttcaaacacaaaacactttgaatgtttttt |
48230055 |
T |
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