View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11459_low_10 (Length: 366)

Name: NF11459_low_10
Description: NF11459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11459_low_10
NF11459_low_10
[»] chr3 (15 HSPs)
chr3 (5-357)||(44028951-44029303)
chr3 (5-146)||(33276903-33277044)
chr3 (5-146)||(10847810-10847951)
chr3 (78-148)||(11652302-11652372)
chr3 (68-143)||(44699784-44699859)
chr3 (78-148)||(46149638-46149708)
chr3 (78-143)||(17603182-17603247)
chr3 (78-143)||(21727503-21727568)
chr3 (83-143)||(48648217-48648277)
chr3 (86-148)||(48765052-48765114)
chr3 (95-137)||(46150720-46150762)
chr3 (78-143)||(17603935-17604000)
chr3 (110-143)||(37987247-37987280)
chr3 (95-136)||(45081394-45081435)
chr3 (95-143)||(55373697-55373745)
[»] chr1 (14 HSPs)
chr1 (5-146)||(37853036-37853177)
chr1 (78-148)||(24991978-24992048)
chr1 (103-137)||(37576943-37576977)
chr1 (78-143)||(24992718-24992783)
chr1 (105-148)||(19172576-19172619)
chr1 (109-143)||(13263521-13263555)
chr1 (109-151)||(46812192-46812234)
chr1 (78-148)||(47967870-47967940)
chr1 (103-136)||(19171798-19171831)
chr1 (86-143)||(25469068-25469125)
chr1 (94-143)||(25671183-25671232)
chr1 (80-137)||(43252502-43252559)
chr1 (86-137)||(4134047-4134099)
chr1 (83-143)||(50271762-50271822)
[»] chr6 (6 HSPs)
chr6 (79-137)||(505556-505613)
chr6 (86-143)||(19653983-19654040)
chr6 (84-128)||(21132699-21132743)
chr6 (79-143)||(10171289-10171353)
chr6 (79-143)||(26529487-26529551)
chr6 (83-143)||(33435353-33435413)
[»] chr8 (7 HSPs)
chr8 (78-143)||(32414497-32414562)
chr8 (78-148)||(28929854-28929924)
chr8 (86-148)||(31641520-31641582)
chr8 (103-143)||(26654376-26654416)
chr8 (95-137)||(17725644-17725686)
chr8 (78-128)||(39860141-39860191)
chr8 (79-143)||(8372927-8372991)
[»] chr4 (13 HSPs)
chr4 (78-143)||(55976180-55976245)
chr4 (78-148)||(55000696-55000766)
chr4 (78-143)||(19550300-19550365)
chr4 (94-143)||(31329707-31329756)
chr4 (78-148)||(24551704-24551774)
chr4 (86-136)||(43146692-43146742)
chr4 (83-148)||(24158799-24158864)
chr4 (86-143)||(47688461-47688518)
chr4 (87-148)||(53147880-53147941)
chr4 (86-143)||(53733713-53733770)
chr4 (78-143)||(55976929-55976994)
chr4 (83-135)||(37273172-37273224)
chr4 (95-143)||(55001431-55001479)
[»] chr2 (9 HSPs)
chr2 (78-143)||(16692947-16693012)
chr2 (105-148)||(40252031-40252074)
chr2 (78-143)||(15902855-15902920)
chr2 (93-143)||(9540345-9540395)
chr2 (103-137)||(18820452-18820486)
chr2 (77-143)||(22301842-22301908)
chr2 (102-147)||(8712001-8712046)
chr2 (94-135)||(34812845-34812886)
chr2 (95-143)||(12725605-12725653)
[»] chr5 (19 HSPs)
chr5 (83-143)||(7632108-7632168)
chr5 (78-156)||(1283473-1283551)
chr5 (78-136)||(9407270-9407328)
chr5 (83-136)||(31082722-31082775)
chr5 (79-143)||(234714-234778)
chr5 (79-143)||(237795-237859)
chr5 (95-143)||(19128783-19128831)
chr5 (83-143)||(22799738-22799798)
chr5 (83-143)||(27364465-27364525)
chr5 (86-148)||(235600-235662)
chr5 (78-148)||(1281844-1281914)
chr5 (77-143)||(1554055-1554121)
chr5 (84-130)||(16538965-16539011)
chr5 (95-156)||(10554547-10554608)
chr5 (95-144)||(27363764-27363813)
chr5 (78-138)||(1281947-1282007)
chr5 (95-143)||(6476781-6476829)
chr5 (83-143)||(19359717-19359777)
chr5 (79-143)||(19360450-19360514)
[»] chr7 (11 HSPs)
chr7 (78-143)||(13785567-13785632)
chr7 (71-143)||(38225942-38226014)
chr7 (90-137)||(31954279-31954326)
chr7 (80-143)||(43065092-43065155)
chr7 (77-143)||(1417621-1417687)
chr7 (83-137)||(47718924-47718978)
chr7 (78-148)||(47719678-47719748)
chr7 (78-135)||(23900336-23900393)
chr7 (86-143)||(24389598-24389655)
chr7 (86-143)||(25343221-25343278)
chr7 (95-143)||(7668495-7668543)
[»] scaffold0096 (1 HSPs)
scaffold0096 (79-143)||(39909-39973)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 5 - 357
Target Start/End: Complemental strand, 44029303 - 44028951
Alignment:
Q  5 gagaagcataggttggggaaaatgcggtgatggtgtgatcaaactcatgtggtgtatttagtaaattaatttggaccattagattaaaagaaataaatgg 104  Q
    ||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44029303 gagaaccatagattgaggaaaatgcagtgatggtgtgatcaaactcatgtggtgtatttagtaaattaatttggaccattagattaaaagaaataaatgg 44029204  T
Q  105 ttaggatttggtgtcaacgaatccattgacacccggtgttaatgaatgcgtttgtggatatgttgtttgaccaaactaaataaatcatccataaatacta 204  Q
     |||||||| ||||||||||||||||||||||| | ||| || | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44029203 ctaggattttgtgtcaacgaatccattgacacctgatgtgaacggatgcttttgtggatatgttgtttgaccaaactaaataaatcatccataaatacta 44029104  T
Q  205 aatgaaacattgttcgaccacttctatcagctctcaacacctttcacttgacatatgaatgaacactcgtaacatccaatcagaatcatgtccttaattt 304  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  44029103 aatgagacattattcgaccacttctatcagctctcaacacctttcacttgacatatgaatgaacactcgtaacatccaatctgaatcatgtccttaattg 44029004  T
Q  305 aattatctggtaaaccaacttcacataacatactgaataaatgaccagcacaa 357  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44029003 aattatctggtaaaccaacttcacataatatactgaataaatgaccagcacaa 44028951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 33277044 - 33276903
Alignment:
Q  5 gagaagcataggttggggaaaatgcggtgatggtgtgatcaaactcatgtggtgtatttagtaaattaatttggaccattagattaaaagaaataaatgg 104  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33277044 gagaaccatagattggggaaaatgcagtgatggtgtgatcaaactcatgtggtgtatttagtaaattaatttggaccattagattaaaagaaataaatgg 33276945  T
Q  105 ttaggatttggtgtcaacgaatccattgacacccggtgttaa 146  Q
     |||||||||||||||||||||||||||||||| | ||||||    
T  33276944 ctaggatttggtgtcaacgaatccattgacaccagatgttaa 33276903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 10847810 - 10847951
Alignment:
Q  5 gagaagcataggttggggaaaatgcggtgatggtgtgatcaaactcatgtggtgtatttagtaaattaatttggaccattagattaaaagaaataaatgg 104  Q
    ||||| ||||| ||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10847810 gagaaccatagattgcgaaaaatgcagtgatggtgtgatcaaactcatgtggtgtatttagtaaattaatttggaccattagattaaaagaaataaatgg 10847909  T
Q  105 ttaggatttggtgtcaacgaatccattgacacccggtgttaa 146  Q
     |||||||||||||||| |||||  |||||||| ||||||||    
T  10847910 ctaggatttggtgtcaatgaatctgttgacacctggtgttaa 10847951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 11652372 - 11652302
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 148  Q
    |||| |||||||||||||||| || | |||||||||||||||||||||||| |||||||| | ||||||||    
T  11652372 gacctttagattaaaagaaatgaacgcttaggatttggtgtcaacgaatccgttgacacctgatgttaatg 11652302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 44699784 - 44699859
Alignment:
Q  68 aattaatt-tggaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||||| |||||| ||||||||||| |||||||||||||  ||||||||||||||||||| |||||||| |||||    
T  44699784 aattaattatggacctttagattaaaa-aaataaatggttaatatttggtgtcaacgaatccgttgacacctggtgt 44699859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 46149708 - 46149638
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 148  Q
    |||| |||||||||||||||  || | ||| ||||||||||||||||||||||||||||| ||||| ||||    
T  46149708 gacctttagattaaaagaaacgaacgtttaagatttggtgtcaacgaatccattgacacctggtgtcaatg 46149638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 17603247 - 17603182
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||| |||||||||||||||| || | ||| |||||||||||||||||||| |||||||| |||||    
T  17603247 gacctttagattaaaagaaatgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgt 17603182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 21727503 - 21727568
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||||||||||| |||||| || | ||| |||||||||||||||||||| |||||||| |||||    
T  21727503 gaccattagattaagagaaatgaacgcttaagatttggtgtcaacgaatccgttgacacctggtgt 21727568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 48648277 - 48648217
Alignment:
Q  83 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||| ||||||||| || ||||| |||||||||||||||||||| |||||||| |||||    
T  48648277 ttagataaaaagaaatcaacggttaagatttggtgtcaacgaatccgttgacacctggtgt 48648217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 48765052 - 48765114
Alignment:
Q  86 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 148  Q
    ||||||||  ||| || ||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  48765052 gattaaaaacaatcaacggttaagatttggtgtcaacgaatccattgacacctggtgtcaatg 48765114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 46150720 - 46150762
Alignment:
Q  95 aaataaatggttaggatttggtgtcaacgaatccattgacacc 137  Q
    ||||||||||||  |||||||||||||||||||| ||||||||    
T  46150720 aaataaatggttgagatttggtgtcaacgaatccgttgacacc 46150762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 17603935 - 17604000
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||| ||||||||||  |||| || | ||| |||||||||||||||||||| |||||||| |||||    
T  17603935 gacctttagattaaattaaatgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgt 17604000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 37987280 - 37987247
Alignment:
Q  110 atttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||||||||||||||||||||||||| |||||    
T  37987280 atttggtgtcaacgaatccattgacacctggtgt 37987247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 45081394 - 45081435
Alignment:
Q  95 aaataaatggttaggatttggtgtcaacgaatccattgacac 136  Q
    ||||||||||||  |||||||||||||||||||| |||||||    
T  45081394 aaataaatggttgagatttggtgtcaacgaatccgttgacac 45081435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 55373697 - 55373745
Alignment:
Q  95 aaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||| ||||||| | ||||||||||||||||||| |||||||| |||||    
T  55373697 aaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 55373745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 37853036 - 37853177
Alignment:
Q  5 gagaagcataggttggggaaaatgcggtgatggtgtgatcaaactcatgtggtgtatttagtaaattaatttggaccattagattaaaagaaataaatgg 104  Q
    ||||| ||||| ||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37853036 gagaaccatagattgagaaaaatgcagtgatggtgtgatcaaactcatgtggtgtatttagtaaattaatttggaccattagattaaaagaaataaatgg 37853135  T
Q  105 ttaggatttggtgtcaacgaatccattgacacccggtgttaa 146  Q
     ||  ||||||||||||||||||| |||||||| | ||||||    
T  37853136 ctaaaatttggtgtcaacgaatccgttgacacctgatgttaa 37853177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 24992048 - 24991978
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 148  Q
    |||| |||||||||| ||||| || | ||| |||||||||||||||||||| |||||||| ||||| ||||    
T  24992048 gacctttagattaaatgaaatgaacgtttatgatttggtgtcaacgaatccgttgacacctggtgtcaatg 24991978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 37576977 - 37576943
Alignment:
Q  103 ggttaggatttggtgtcaacgaatccattgacacc 137  Q
    |||||||||||||||||||||||||||||||||||    
T  37576977 ggttaggatttggtgtcaacgaatccattgacacc 37576943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 24992718 - 24992783
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||| |||||||||||||||| || | ||| |||||| ||||||||||||| |||||||| |||||    
T  24992718 gacctttagattaaaagaaatgaacgtttaagatttgatgtcaacgaatccgttgacacctggtgt 24992783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 19172576 - 19172619
Alignment:
Q  105 ttaggatttggtgtcaacgaatccattgacacccggtgttaatg 148  Q
    |||||||||||||||||||||||| |||||||| ||||| ||||    
T  19172576 ttaggatttggtgtcaacgaatccgttgacacctggtgtcaatg 19172619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 13263521 - 13263555
Alignment:
Q  109 gatttggtgtcaacgaatccattgacacccggtgt 143  Q
    ||||||||||||||||||||||||||||| |||||    
T  13263521 gatttggtgtcaacgaatccattgacacctggtgt 13263555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 46812192 - 46812234
Alignment:
Q  109 gatttggtgtcaacgaatccattgacacccggtgttaatgaat 151  Q
    |||||||||||||||||||| |||||||| |||||||| ||||    
T  46812192 gatttggtgtcaacgaatccgttgacacctggtgttaacgaat 46812234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 47967940 - 47967870
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 148  Q
    |||| ||||||||| |||||| || | | | |||||||||||||||||||| |||||||| ||||| ||||    
T  47967940 gacctttagattaagagaaatgaacgctcaagatttggtgtcaacgaatccgttgacacctggtgtcaatg 47967870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 19171831 - 19171798
Alignment:
Q  103 ggttaggatttggtgtcaacgaatccattgacac 136  Q
    |||||||||||||||||||||||||| |||||||    
T  19171831 ggttaggatttggtgtcaacgaatccgttgacac 19171798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 25469068 - 25469125
Alignment:
Q  86 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    ||||||||  ||| || ||||| |||||||||||||||||||| |||||||| |||||    
T  25469068 gattaaaaacaatcaacggttaagatttggtgtcaacgaatccgttgacacctggtgt 25469125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 25671232 - 25671183
Alignment:
Q  94 gaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    ||||| ||||||||||||||||||| ||||||||| || ||||| |||||    
T  25671232 gaaatcaatggttaggatttggtgttaacgaatccgttaacaccaggtgt 25671183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 43252559 - 43252502
Alignment:
Q  80 ccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacc 137  Q
    ||||||||| |||| ||||||| || || |||||||||||||| ||||| ||||||||    
T  43252559 ccattagatcaaaataaataaagggataagatttggtgtcaacaaatccgttgacacc 43252502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 4134099 - 4134047
Alignment:
Q  86 gattaaaa-gaaataaatggttaggatttggtgtcaacgaatccattgacacc 137  Q
    |||||||| ||||| || ||||| ||||||||||||||||||||| |||||||    
T  4134099 gattaaaatgaaatgaaaggttaagatttggtgtcaacgaatccagtgacacc 4134047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 50271762 - 50271822
Alignment:
Q  83 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||| ||||||||| ||  |||| |||||||||||||||||| |||||| ||| |||||    
T  50271762 ttagatcaaaagaaatcaacagttaagatttggtgtcaacgaattcattgatacctggtgt 50271822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 505613 - 505556
Alignment:
Q  79 accattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacc 137  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||  ||||||||    
T  505613 accattagattaaaa-aaataaatggttagaatttggtgtcaacgaatctgttgacacc 505556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 19654040 - 19653983
Alignment:
Q  86 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||||  ||||||| ||||| |||||||||||||||| |||||||||||| |||||    
T  19654040 gattaaataaaataaacggttaagatttggtgtcaacgagtccattgacaccaggtgt 19653983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 21132743 - 21132699
Alignment:
Q  84 tagattaaaagaaataaatggttaggatttggtgtcaacgaatcc 128  Q
    |||||||||| |||||||||||||||||||| |||||||| ||||    
T  21132743 tagattaaaaaaaataaatggttaggatttgatgtcaacggatcc 21132699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 10171353 - 10171289
Alignment:
Q  79 accattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||| ||||||  |||||| | ||||  |||||||||||||||||||| |||||||| |||||    
T  10171353 accattggattaattgaaatagacggttgagatttggtgtcaacgaatccgttgacacctggtgt 10171289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 26529487 - 26529551
Alignment:
Q  79 accattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||| ||||||  |||||| | ||||  |||||||||||||||||||| |||||||| |||||    
T  26529487 accattggattaattgaaatagacggttgagatttggtgtcaacgaatccgttgacacctggtgt 26529551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 33435413 - 33435353
Alignment:
Q  83 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||| ||||||||| ||  |||| |||||||||||||||||||| || ||||| |||||    
T  33435413 ttagataaaaagaaatcaacagttaagatttggtgtcaacgaatccgttaacaccaggtgt 33435353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 32414497 - 32414562
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||||||||||| |||||| || | ||| |||||||||||||||||||| |||||||| |||||    
T  32414497 gaccattagattaagagaaatgaacgcttaagatttggtgtcaacgaatccgttgacacctggtgt 32414562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 28929924 - 28929854
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 148  Q
    |||| |||||||||||||||| || | ||| |||||||||||||||||||| |||||| | ||||| ||||    
T  28929924 gacctttagattaaaagaaatgaaagtttaagatttggtgtcaacgaatccgttgacatctggtgtcaatg 28929854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 31641582 - 31641520
Alignment:
Q  86 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 148  Q
    ||||||||  ||| || ||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  31641582 gattaaaaacaatcaacggttaagatttggtgtcaacgaatccattgacacctggtgtcaatg 31641520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 26654376 - 26654416
Alignment:
Q  103 ggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    ||||| ||||||||||||||||||||||||||||| |||||    
T  26654376 ggttaagatttggtgtcaacgaatccattgacacctggtgt 26654416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 17725644 - 17725686
Alignment:
Q  95 aaataaatggttaggatttggtgtcaacgaatccattgacacc 137  Q
    |||||||||| ||||||||||||||||||||| | ||||||||    
T  17725644 aaataaatggataggatttggtgtcaacgaattcgttgacacc 17725686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 39860191 - 39860141
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatcc 128  Q
    |||||||||||||| |||||| || | ||| ||||||||||||||||||||    
T  39860191 gaccattagattaagagaaatgaacgcttaagatttggtgtcaacgaatcc 39860141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 8372991 - 8372927
Alignment:
Q  79 accattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||||||| ||| ||||| || | |||  ||||||||||||||||||| |||||||| |||||    
T  8372991 accattagatcaaacgaaatcaacgattaatatttggtgtcaacgaatccgttgacaccaggtgt 8372927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 55976245 - 55976180
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||| |||||||||||||||| || | ||| |||||||||||||||||||| |||||||| |||||    
T  55976245 gacctttagattaaaagaaatgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgt 55976180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 55000766 - 55000696
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 148  Q
    |||| |||||||||||||||| || | ||| |||||||||||||||||||| |||||| | ||||| ||||    
T  55000766 gacctttagattaaaagaaatgaacgtttaagatttggtgtcaacgaatccgttgacatctggtgtcaatg 55000696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 19550365 - 19550300
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||||||||||| |||||| || | |||  ||||||||||||||||||| |||||||| |||||    
T  19550365 gaccattagattaagagaaatgaacgcttaaaatttggtgtcaacgaatccgttgacacctggtgt 19550300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 31329707 - 31329756
Alignment:
Q  94 gaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    ||||| ||||||||||||||||||| ||||||||| |||||||| |||||    
T  31329707 gaaatcaatggttaggatttggtgttaacgaatccgttgacacctggtgt 31329756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 24551774 - 24551704
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 148  Q
    |||| |||||||||| ||||| || | |||||||||| ||||||||||||| | |||||| ||||| ||||    
T  24551774 gacctttagattaaatgaaatgaacgtttaggatttgatgtcaacgaatccgtcgacacctggtgtcaatg 24551704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 43146742 - 43146692
Alignment:
Q  86 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacac 136  Q
    |||||||  ||||||| ||||| |||||||||||||||||||| |||||||    
T  43146742 gattaaataaaataaacggttaagatttggtgtcaacgaatccgttgacac 43146692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 24158799 - 24158864
Alignment:
Q  83 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 148  Q
    |||||| ||| ||||| || ||||| |||||||||||||||||||  |||||||| ||||| ||||    
T  24158799 ttagatcaaatgaaatcaacggttaagatttggtgtcaacgaatctgttgacacctggtgtcaatg 24158864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 47688461 - 47688518
Alignment:
Q  86 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||||  ||||||| ||||  |||||||||||||||||||| |||||||| |||||    
T  47688461 gattaaataaaataaacggttgagatttggtgtcaacgaatccgttgacacctggtgt 47688518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 53147941 - 53147880
Alignment:
Q  87 attaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 148  Q
    |||||||  |||||| |||| ||||||||||||||||||||| |||||| | ||||| ||||    
T  53147941 attaaaaacaataaacggttgggatttggtgtcaacgaatccgttgacatctggtgtcaatg 53147880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 53733713 - 53733770
Alignment:
Q  86 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    ||||||| |||||| ||||||   ||||||||||||||||||| |||||||| |||||    
T  53733713 gattaaatgaaatagatggttgaaatttggtgtcaacgaatccgttgacacctggtgt 53733770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 55976929 - 55976994
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||| ||||||||||  |||| || | ||| |||||||||||||||||||| |||||||| |||||    
T  55976929 gacctttagattaaattaaatgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgt 55976994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 37273224 - 37273172
Alignment:
Q  83 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgaca 135  Q
    ||||||||||| |||| || | ||| ||||||||||||||| |||||||||||    
T  37273224 ttagattaaaaaaaatgaacgtttaagatttggtgtcaacggatccattgaca 37273172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 55001431 - 55001479
Alignment:
Q  95 aaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    ||||||| ||||| ||||| |||||||||||||| |||||||| |||||    
T  55001431 aaataaacggttaagatttagtgtcaacgaatccgttgacacctggtgt 55001479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 16692947 - 16693012
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||||||||||| |||||| || | ||| |||||||||||||||||||| |||||||| |||||    
T  16692947 gaccattagattaagagaaatgaacgcttaagatttggtgtcaacgaatccgttgacacctggtgt 16693012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 40252074 - 40252031
Alignment:
Q  105 ttaggatttggtgtcaacgaatccattgacacccggtgttaatg 148  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  40252074 ttaggatttggtgtcaacgaatccgttgacacctggtgttaatg 40252031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 15902855 - 15902920
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||||||||||| |||||| || | ||| ||||| |||||||||||||| |||||||| |||||    
T  15902855 gaccattagattaagagaaatgaacgcttaagattttgtgtcaacgaatccgttgacacctggtgt 15902920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 9540395 - 9540345
Alignment:
Q  93 agaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||| |||||||| |||||||||||||||||| | |||||||| |||||    
T  9540395 agaaatcaatggttaagatttggtgtcaacgaattcgttgacacctggtgt 9540345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 18820486 - 18820452
Alignment:
Q  103 ggttaggatttggtgtcaacgaatccattgacacc 137  Q
    |||||||||||||||||||||||||| ||||||||    
T  18820486 ggttaggatttggtgtcaacgaatccgttgacacc 18820452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 22301842 - 22301908
Alignment:
Q  77 ggaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    ||||| || ||||||| | | |||||||||| |||||||||||||||||| | |||||||| |||||    
T  22301842 ggacccttggattaaatgtattaaatggttaagatttggtgtcaacgaattcgttgacacctggtgt 22301908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 8712001 - 8712046
Alignment:
Q  102 tggttaggatttggtgtcaacgaatccattgacacccggtgttaat 147  Q
    ||||| |||||||||||||||||||| ||||||| | |||||||||    
T  8712001 tggttgggatttggtgtcaacgaatctattgacatctggtgttaat 8712046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 34812845 - 34812886
Alignment:
Q  94 gaaataaatggttaggatttggtgtcaacgaatccattgaca 135  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||    
T  34812845 gaaatcaatggttaggatttggtgttaacgaatccgttgaca 34812886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 12725605 - 12725653
Alignment:
Q  95 aaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||| ||||||| ||||||||||||||| ||||| |||||||| |||||    
T  12725605 aaatgaatggttgggatttggtgtcaacaaatccgttgacacctggtgt 12725653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 7632168 - 7632108
Alignment:
Q  83 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||| |||| |||||||||| || |||||||||||||||||||| |||||||| |||||    
T  7632168 ttagatcaaaataaataaatggataagatttggtgtcaacgaatccgttgacacctggtgt 7632108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 1283473 - 1283551
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatgaatgcgtt 156  Q
    |||| ||||||||||| |||| || | ||| |||||||||||||||||||| |||||||| ||||| || |||| ||||    
T  1283473 gacctttagattaaaataaatgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgtcaacgaatccgtt 1283551  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 9407328 - 9407270
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacac 136  Q
    |||| |||||||||||||||| || | ||| |||||||||||||||||||| |||||||    
T  9407328 gacctttagattaaaagaaatgaacgcttaagatttggtgtcaacgaatccgttgacac 9407270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 31082722 - 31082775
Alignment:
Q  83 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacac 136  Q
    |||||| ||||||||| ||| |||| |||||||||||||||||| |||||||||    
T  31082722 ttagatcaaaagaaatcaatagttaagatttggtgtcaacgaattcattgacac 31082775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 234778 - 234714
Alignment:
Q  79 accattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||||||| ||| ||||| || |||||  ||||||||||||||||||| |||||||| |||||    
T  234778 accattagataaaacgaaatcaacggttaatatttggtgtcaacgaatccgttgacacctggtgt 234714  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 237795 - 237859
Alignment:
Q  79 accattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||||||| ||| ||||| || |||||  ||||||||||||||||||| |||||||| |||||    
T  237795 accattagatgaaacgaaatcaacggttaatatttggtgtcaacgaatccgttgacacctggtgt 237859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 19128831 - 19128783
Alignment:
Q  95 aaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    ||||||| ||||| |||||||||||||||||||| |||||||| |||||    
T  19128831 aaataaacggttaagatttggtgtcaacgaatccgttgacacctggtgt 19128783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 22799738 - 22799798
Alignment:
Q  83 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||| ||||||||| ||  |||| |||||||||||||||||| |||||||||| |||||    
T  22799738 ttagatcaaaagaaatcaacagttaagatttggtgtcaacgaattcattgacacctggtgt 22799798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 27364465 - 27364525
Alignment:
Q  83 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    ||||||||||  || | |||||||  ||||||||||||||||||||||||||||| |||||    
T  27364465 ttagattaaaccaatttaatggttgagatttggtgtcaacgaatccattgacacctggtgt 27364525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 235662 - 235600
Alignment:
Q  86 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 148  Q
    ||||||| |||||| | ||||  |||||||||||||||||||| |||||||| ||||| ||||    
T  235662 gattaaatgaaatagacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatg 235600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 1281914 - 1281844
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 148  Q
    |||| ||||||||||  |||| || | ||| |||||||||||||||||||| |||||||| ||||| ||||    
T  1281914 gacctttagattaaattaaatgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgtcaatg 1281844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 1554055 - 1554121
Alignment:
Q  77 ggaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    ||||| || ||||||| | | |||||||||| |||||||||||||||||| | |||||||| |||||    
T  1554055 ggacccttggattaaatgtattaaatggttaagatttggtgtcaacgaattcgttgacacctggtgt 1554121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 16538965 - 16539011
Alignment:
Q  84 tagattaaaagaaataaatggttaggatttggtgtcaacgaatccat 130  Q
    ||||||||||||||| || | ||| ||||||||||||||||||||||    
T  16538965 tagattaaaagaaatgaacgtttaagatttggtgtcaacgaatccat 16539011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 10554608 - 10554547
Alignment:
Q  95 aaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatgaatgcgtt 156  Q
    |||| |||||||  |||||||||||||||||||| |||||||| ||||| || |||| ||||    
T  10554608 aaatgaatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgaatccgtt 10554547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 27363764 - 27363813
Alignment:
Q  95 aaataaatggttaggatttggtgtcaacgaatccattgacacccggtgtt 144  Q
    |||| ||||||| | ||||||||||||||||||| |||||||| ||||||    
T  27363764 aaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgtt 27363813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 1282007 - 1281947
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacaccc 138  Q
    |||| ||||||||||  |||| || | ||| |||||||||||||||||||| |||||||||    
T  1282007 gacctttagattaaattaaattaacgtttaagatttggtgtcaacgaatccgttgacaccc 1281947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 6476781 - 6476829
Alignment:
Q  95 aaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||| |||||||  |||||||||||||||||||| |||||||| |||||    
T  6476781 aaatgaatggttgagatttggtgtcaacgaatccgttgacacctggtgt 6476829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 19359777 - 19359717
Alignment:
Q  83 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||| ||| ||||| || |||||  ||||||||||||||||||| |||||||| |||||    
T  19359777 ttagatcaaacgaaatcaacggttaatatttggtgtcaacgaatccgttgacacctggtgt 19359717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 19360450 - 19360514
Alignment:
Q  79 accattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||||||| ||| ||||| || |||||  ||||||||||||||||| | |||||||| |||||    
T  19360450 accattagatcaaacgaaatcaacggttaatatttggtgtcaacgaattcgttgacacctggtgt 19360514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 13785567 - 13785632
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||| ||||||||| |||||| || | ||| |||||||||||||||||||| |||||||| |||||    
T  13785567 gacctttagattaagagaaattaacgcttaagatttggtgtcaacgaatccgttgacacctggtgt 13785632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 38225942 - 38226014
Alignment:
Q  71 taatttggaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||| |||||| || ||||||| | | |||||||||| |||||||||||||||||| | |||||||| |||||    
T  38225942 taatctggacccttggattaaatgtattaaatggttaagatttggtgtcaacgaattcgttgacacctggtgt 38226014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 31954279 - 31954326
Alignment:
Q  90 aaaagaaataaatggttaggatttggtgtcaacgaatccattgacacc 137  Q
    ||||||||| || ||||| |||||||||||||||||||| ||||||||    
T  31954279 aaaagaaatcaacggttaagatttggtgtcaacgaatccgttgacacc 31954326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 43065092 - 43065155
Alignment:
Q  80 ccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    ||||||||| |||| ||||||| ||  | |||||||||||||||||||| |||||||| |||||    
T  43065092 ccattagatcaaaataaataaagggacaagatttggtgtcaacgaatccgttgacacctggtgt 43065155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 1417687 - 1417621
Alignment:
Q  77 ggaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    ||||| || ||||||| | | |||||||||| |||||||||||||||||| | |||||||| |||||    
T  1417687 ggacccttggattaaatgtattaaatggttaagatttggtgtcaacgaattcgttgacacctggtgt 1417621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 47718978 - 47718924
Alignment:
Q  83 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacc 137  Q
    |||||||||||||||| ||   ||| |||||||||||||||||||| ||||||||    
T  47718978 ttagattaaaagaaatgaacatttaagatttggtgtcaacgaatccgttgacacc 47718924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 47719678 - 47719748
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 148  Q
    |||| ||||||||||  |||| || | ||| |||||||||||||||||||| |||||||| ||||| ||||    
T  47719678 gacctttagattaaattaaatgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgtcaatg 47719748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 23900393 - 23900336
Alignment:
Q  78 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgaca 135  Q
    |||| |||||||||| ||||| || | ||||||||||| |||||||||||| ||||||    
T  23900393 gacctttagattaaatgaaatgaacgtttaggatttggagtcaacgaatccgttgaca 23900336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 24389598 - 24389655
Alignment:
Q  86 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||||  ||||||||||||  ||||||||||||| |||||| |||||||| |||||    
T  24389598 gattaaataaaataaatggttgagatttggtgtcaatgaatccgttgacacctggtgt 24389655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 25343221 - 25343278
Alignment:
Q  86 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||||| ||||  ||||||  |||||||||||||||||| |||||||||| |||||    
T  25343221 gattaaaaaaaattgatggttgagatttggtgtcaacgaattcattgacacctggtgt 25343278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 7668543 - 7668495
Alignment:
Q  95 aaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||| |||||||  |||||||||||||||||||| |||||||| |||||    
T  7668543 aaatgaatggttgagatttggtgtcaacgaatccgttgacacctggtgt 7668495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 39973 - 39909
Alignment:
Q  79 accattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 143  Q
    |||||||||| ||| ||||| || | |||  ||||||||||||||||||| |||||||| |||||    
T  39973 accattagatcaaacgaaatcaacgattaatatttggtgtcaacgaatccgttgacacctggtgt 39909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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