View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11459_low_12 (Length: 353)
Name: NF11459_low_12
Description: NF11459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11459_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 36790361 - 36790039
Alignment:
| Q |
18 |
ggtattggagttaggctataatgtctgaaactatatggcttcaacgcattgagaagctgagaaaaacagcatctaggagcttgtctcagttcatacaagg |
117 |
Q |
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| T |
36790361 |
ggtattggagttaggctataatgtctgaaactatatggcttcaacgcattgagaagctgagaaaaacagcatctaggagcttgtctcagttcatacaagg |
36790262 |
T |
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| Q |
118 |
cttttggaagcgacaaacatgtcagagttaggagagtgaaaactaacaaggggtttataaacttgcacttctcgatcgtgctcgacaaagacaatatcat |
217 |
Q |
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| T |
36790261 |
cttttggaagcgacaaacatgtcagagttaggagggtgaaaaccaacaaggggtttataaacttgcacttttcgatcgtgctcgacaaagacaatatcat |
36790162 |
T |
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| Q |
218 |
gtgacaccacaaacatacttggcaaaacaaaagctgtttttctttgtaagtgaaaactaaaatttataacactcacacattttacgtgctaaccacttgg |
317 |
Q |
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| T |
36790161 |
gtgacaccacaaacatacttggcaaaacaaatgctgtttttctttgtaagtgaaaactaaaatttataacactcacacattttacgtgctaaccacttgg |
36790062 |
T |
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| Q |
318 |
gcttcaatcgtttttctctctct |
340 |
Q |
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| T |
36790061 |
gcttcaatcgtttttttctctct |
36790039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 27094380 - 27094316
Alignment:
| Q |
150 |
agagtgaaaactaacaaggggtttataaacttgcacttctcgatcgtgctcgacaaagacaatat |
214 |
Q |
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| T |
27094380 |
agagtgaaaactaacaaggggtttataaacttgcacttctcaaacgtgcttgacaaagacaatat |
27094316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 13805826 - 13805786
Alignment:
| Q |
150 |
agagtgaaaactaacaaggggtttataaacttgcacttctc |
190 |
Q |
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| T |
13805826 |
agagtgaaaactaacaaggggtttataaacttgcacttctc |
13805786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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