View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11459_low_13 (Length: 340)
Name: NF11459_low_13
Description: NF11459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11459_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 28088512 - 28088190
Alignment:
| Q |
1 |
aagagctaaatactgacaaactgagttaaaaaacaatagcagctacgacaaccccccggcaacaactaaggtatctgtctagtacacacaacctattcct |
100 |
Q |
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| T |
28088512 |
aagagctaaatactgacaaactgagttaaaaaacaaaagcagctacgacaaccccccggcaacaactaaggtatctgtctagtacacacaacctattcct |
28088413 |
T |
|
| Q |
101 |
gaatatataatcgtttcatgccttccgaagaacccaaaccagtgccgaattaaccaataactccttctaagcttctacaactgagcctcctctataaaac |
200 |
Q |
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| T |
28088412 |
gaatatatgatcgtttcatgccttccgaagaacccaaaccagtgccgaattaaccaataactccttctaagcttctacaactgagcctcctctataaaac |
28088313 |
T |
|
| Q |
201 |
attccaaatgtacaaaaaggttcgatggagtaataaaaccaataccaagccatctaaacaccaacgaccacactcttaagggccctttctcagaacagaa |
300 |
Q |
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|||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28088312 |
attccaaatgtagaaaaaagtttgatggagtaataaaaccaataccaagccatctaaacactaacgaccacactcttaagggccctttctcagaacagaa |
28088213 |
T |
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| Q |
301 |
acaacccatctaaatactcttct |
323 |
Q |
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||||||||||||||||||||||| |
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| T |
28088212 |
acaacccatctaaatactcttct |
28088190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 91 - 319
Target Start/End: Original strand, 28105154 - 28105385
Alignment:
| Q |
91 |
acctattcctgaatatataatcgtttcatgccttccgaagaacccaaaccagtgccgaattaaccaataactccttctaagcttctacaactgagcctcc |
190 |
Q |
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| T |
28105154 |
acctattcttgaatatatgatcatttttcgcctacagaataacccaaaccagtgccaaattaaccaataaccccttctaaacttcttcgaccgagactct |
28105253 |
T |
|
| Q |
191 |
tctataaaacattccaaatgtac---aaaaaggttcgatggagtaat-aaaaccaataccaagccatctaaacaccaacgaccacactcttaagggccct |
286 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||| |
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| T |
28105254 |
cctataaaacattccaaatgtacaaaaaaaaggtttgatggagtaataaaaaccaataccaacccatctaaacaccaacggccacactc-taagggccct |
28105352 |
T |
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| Q |
287 |
ttctcagaacagaaacaacccatctaaatactc |
319 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
28105353 |
ttctcagaacagaaacaacccatctaaatactc |
28105385 |
T |
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