View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11459_low_14 (Length: 319)
Name: NF11459_low_14
Description: NF11459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11459_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 24599486 - 24599774
Alignment:
| Q |
17 |
aaatttcacactgaaaacgtagcacgcacatgttataatttgtttatagaaacaactttccatagttccatgtttaaaatgtttccatatataaacgttt |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
24599486 |
aaatttcacactgaaaacgtagcacccacatgttataatttgtttatagaaacaactttccacagttccatgtttaaaatgtttccatatatacacgttt |
24599585 |
T |
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| Q |
117 |
cgaatggataaaccaagccacacactcaacttgtgaaatatggtgtgttagaaacaaagaatgtttttaagggacttatgttgatgtgattatcattgtt |
216 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24599586 |
cgaatggatataccaagccacacactcaacttgtgaaatatggtgtgttagaaacaaagaatgtttttaagggacttatgttgatgtgattatcattgtt |
24599685 |
T |
|
| Q |
217 |
caaatgatataaatgtctattgttaatttctagaatattagtgcgattttgttaattggaggtctaaatcggcatcatatatatgatgt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24599686 |
caaatgatataaatgtctattgttaatttctagaatattagtgcgattttgttaattggaggtctaaatcggcatcatatatatgatgt |
24599774 |
T |
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