View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11459_low_16 (Length: 290)
Name: NF11459_low_16
Description: NF11459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11459_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 38792067 - 38791798
Alignment:
| Q |
19 |
gtttcggcctttggtgcctcctggtgtttgttttcatcagtgtgtggaggcttgtttgtttggatttgtttgtaatctctaaccttttgtactccttgtg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
38792067 |
gtttcggcctttggtgcctcctggtgtttgttttcatcggtgcgtggaggcttgtttgttttgatttgtttgtaatctctagccttttgtactccttgtg |
38791968 |
T |
|
| Q |
119 |
ctaggctttattgaatgaattaagttgtttaagaaaaaactacttttgcaacttcttagctttattttgtgttcaaattttaatatttttatttgnnnnn |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
38791967 |
ctaggctttattgaatgaattaagttgtttaagaaaaaactacttttgcaacttcttagctttattttgtgttc-tattttaatatttttatttgaaaaa |
38791869 |
T |
|
| Q |
219 |
nntatcatgttattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattgatgt |
289 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
38791868 |
tatatcatgttattgatacaaaaagaaatacaacttaaaaacatgaaaacttgaagcacacaaattgatgt |
38791798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 407801 - 407528
Alignment:
| Q |
19 |
gtttcggcctttggtgcctcctggtgtttgttttcatcagtgtgtggaggcttgtttgtttggatttgtttgtaatctctaaccttttgtactccttgtg |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||| |||||||||| |
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|
| T |
407801 |
gtttcggcctttggtgcctcccggtgtttgttttcatcagtgcgtggagacttgtttgtttggatttgtttgtaaactctagccttttgcactccttgtg |
407702 |
T |
|
| Q |
119 |
ctaggctttattgaatgaattaagttgtt-taagaaa--aaactacttttgcaacttcttagctttattttgtgttcaaattttaatatttttatttgnn |
215 |
Q |
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|
||||||||||||||||||||||| ||| ||| ||| | || || || |||||| |||||||||||||| | ||||| | ||||||||||||||| |
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|
| T |
407701 |
ctaggctttattgaatgaattaatcagttataaaaaatgacaccgctctttcaactttttagctttattttgcgatcaaactataatatttttatttgga |
407602 |
T |
|
| Q |
216 |
nnnnntatcatgttattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattgatgt |
289 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||| |||||||| ||||||||||| |||||||||||||| |
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|
| T |
407601 |
aggaatatcatgttattgatgctgaaagaaatactactaaagaatattaaaacttgaagtacacaaattgatgt |
407528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 416141 - 416414
Alignment:
| Q |
19 |
gtttcggcctttggtgcctcctggtgtttgttttcatcagtgtgtggaggcttgtttgtttggatttgtttgtaatctctaaccttttgtactccttgtg |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||| |||||||||| |
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|
| T |
416141 |
gtttcggcctttggtgcctcccggtgtttgttttcatcagtgcgtggagacttgtttgtttggatttgtttgtaaactctagccttttgcactccttgtg |
416240 |
T |
|
| Q |
119 |
ctaggctttattgaatgaattaagttgtt-taagaaa--aaactacttttgcaacttcttagctttattttgtgttcaaattttaatatttttatttgnn |
215 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| ||| | || || || |||||| |||||||||||||| | ||||| | ||||||||||||||| |
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|
| T |
416241 |
ctaggctttattgaatgaattaatcagttataaaaaatgacaccgctctttcaactttttagctttattttgcgatcaaactataatatttttatttgga |
416340 |
T |
|
| Q |
216 |
nnnnntatcatgttattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattgatgt |
289 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||| |||||||| ||||||||||| |||||||||||||| |
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|
| T |
416341 |
aggaatatcatgttattgatgctgaaagaaatactactaaagaatattaaaacttgaagtacacaaattgatgt |
416414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 26305591 - 26305647
Alignment:
| Q |
157 |
actacttttgcaacttcttagctttattttgtgttcaaattttaatatttttatttg |
213 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || |||||| ||||||| ||||| |
|
|
| T |
26305591 |
actacttttgcaactttttagctttattttgtattagaattttgatattttcatttg |
26305647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 24345724 - 24345997
Alignment:
| Q |
19 |
gtttcggcctttggtgcctcctggtgtttgttttcatcagtgtgtggaggcttgtttgtttggatttgtttgtaatctctaaccttttgtactccttgtg |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||| |||||||||| |
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|
| T |
24345724 |
gtttcggcctttggtgcctcccggtgtttgttttcatcagtgcgtggagacttgtttgtttggatttgtttgtaaactctagccttttgcactccttgtg |
24345823 |
T |
|
| Q |
119 |
ctaggctttattgaatgaattaagttgtt-taagaaa--aaactacttttgcaacttcttagctttattttgtgttcaaattttaatatttttatttgnn |
215 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| ||| | || || || |||||| |||||||||||||| | ||||| | ||||||||||||||| |
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|
| T |
24345824 |
ctaggctttattgaatgaattaatcagttataaaaaatgacaccgctctttcaactttttagctttattttgcgatcaaactataatatttttatttgga |
24345923 |
T |
|
| Q |
216 |
nnnnntatcatgttattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattgatgt |
289 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||| |||||||| ||||||||||| |||||||||||||| |
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|
| T |
24345924 |
aggaatatcatgttattgatgctgaaagaaatactactaaagaatattaaaacttgaagtacacaaattgatgt |
24345997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 24357996 - 24358269
Alignment:
| Q |
19 |
gtttcggcctttggtgcctcctggtgtttgttttcatcagtgtgtggaggcttgtttgtttggatttgtttgtaatctctaaccttttgtactccttgtg |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||| |||||||||| |
|
|
| T |
24357996 |
gtttcggcctttggtgcctcccggtgtttgttttcatcagtgcgtggagacttgtttgtttggatttgtttgtaaactctagccttttgcactccttgtg |
24358095 |
T |
|
| Q |
119 |
ctaggctttattgaatgaattaagttgtt-taagaaa--aaactacttttgcaacttcttagctttattttgtgttcaaattttaatatttttatttgnn |
215 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| ||| | || || || |||||| |||||||||||||| | ||||| | ||||||||||||||| |
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|
| T |
24358096 |
ctaggctttattgaatgaattaatcagttataaaaaatgacaccgctctttcaactttttagctttattttgcgatcaaactataatatttttatttgga |
24358195 |
T |
|
| Q |
216 |
nnnnntatcatgttattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattgatgt |
289 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
24358196 |
aggaatatcatgttattgatgctgaaagaaatactactaaagaatattaaaacttgaagtacacaaattgatgt |
24358269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 24184284 - 24184011
Alignment:
| Q |
19 |
gtttcggcctttggtgcctcctggtgtttgttttcatcagtgtgtggaggcttgtttgtttggatttgtttgtaatctctaaccttttgtactccttgtg |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||| |||||||||| |
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|
| T |
24184284 |
gtttcggcctttggtgcctcccagtgtttgttttcatcagtgcgtggagacttgtttgtttggatttgtttgtaaactctagccttttgcactccttgtg |
24184185 |
T |
|
| Q |
119 |
ctaggctttattgaatgaattaagttgtt-taagaaa--aaactacttttgcaacttcttagctttattttgtgttcaaattttaatatttttatttgnn |
215 |
Q |
| |
|
||||| ||||||||||||||||| ||| ||| ||| | || || || |||||| |||||||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
24184184 |
ctaggttttattgaatgaattaatcagttataaaaaatgacaccgctctttcaactttttagctttattttgtgatcaaactgtaatatttttatttgga |
24184085 |
T |
|
| Q |
216 |
nnnnntatcatgttattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattgatgt |
289 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
24184084 |
aggaatatcatgttattgatgccgaaagaaatactactaaagaatattaaaacttgaagtacacaaattgatgt |
24184011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 20786244 - 20786179
Alignment:
| Q |
221 |
tatcatgttattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattgatgt |
289 |
Q |
| |
|
||||||||||||||| | |||||||||| | |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
20786244 |
tatcatgttattgatgccaaaagaaatacta---aagaatattaaaacttgaagtacacaaattgatgt |
20786179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 27980060 - 27980120
Alignment:
| Q |
229 |
tattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattgatgt |
289 |
Q |
| |
|
||||||| | |||||||||| |||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
27980060 |
tattgatgctgaaagaaataatacttaagaatattaaaacttgaagtacacaaattgatgt |
27980120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 15046686 - 15046621
Alignment:
| Q |
221 |
tatcatgttattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattgatgt |
289 |
Q |
| |
|
||||||||||||||| | |||||||||| | |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
15046686 |
tatcatgttattgatgccaaaagaaatacta---aagaatattaaaacttgaagtacacaaattgatgt |
15046621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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