View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11459_low_3 (Length: 526)
Name: NF11459_low_3
Description: NF11459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11459_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 160 - 515
Target Start/End: Original strand, 40733615 - 40733965
Alignment:
| Q |
160 |
gaggaaccattggggtgatcaatagcaccatattcattgaggaaagccagacaaag-taacttttgtctggcgccttaactggatggttgtccttgaata |
258 |
Q |
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| T |
40733615 |
gaggagccattggggtgatcaatagcaccatattcattgaggaaagccagacaaaggtaacttttgtctggcgccttaactggatagttgtccttgaata |
40733714 |
T |
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| Q |
259 |
ctttgaagctgtagcttttctcttcctctgagtatgttttgctatatttctcgcaccaactttcaaacagttcaaagaagtccgcatcagagacctagaa |
358 |
Q |
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| T |
40733715 |
ctttgaagctgtagcgtttctcttcctctgagtatgttttgccatatttctcacaccaactttcaaacagttcaaagaagttcgcatc------ctagaa |
40733808 |
T |
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| Q |
359 |
acaagcccttgatcatgtgatccattgcattccaaacaattatagatccattatcgcaacaagattaacctaaaaagagtttttgccataaaaatgcata |
458 |
Q |
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| T |
40733809 |
ataagcccttgatcatgtgatccattgcattccaaacaattatagatccattatcgcaacaagattaacctaaaaagagtttttgccataaaaatgcata |
40733908 |
T |
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| Q |
459 |
caaattaacacgagttaattaagtaaaacctaccccatggacaaatgcttccttcat |
515 |
Q |
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| T |
40733909 |
caaattaacacgagttaattaagtaaaacctaccccatggacaaatgcttccttcat |
40733965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 6 - 156
Target Start/End: Original strand, 40733354 - 40733509
Alignment:
| Q |
6 |
acaaaataattctaatgatgatgactttatcccacatgtagcatatttactgcataagtctaacatatagccattgtaataataagat-----aggaaag |
100 |
Q |
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| T |
40733354 |
acaaaataattctaatgatgatgactttatcgcacatgtagcatatttactgcataagtctaacatatagccattgtaataataagataggaaaggaaag |
40733453 |
T |
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| Q |
101 |
caaaccaagatgaagaagaaatagagaacaaaaaaggatgaaaatgataggtctta |
156 |
Q |
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| T |
40733454 |
caaaccaagatgaagaagaaatagagaacaaaaaaggatgaaaatgataggtctta |
40733509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 359
Target Start/End: Complemental strand, 37472205 - 37472083
Alignment:
| Q |
240 |
ggatggttgtccttgaatactttgaagctgtagcttttctcttcctct---gagtatgttttgctatatttctcgcaccaactttcaaacagttcaaaga |
336 |
Q |
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| T |
37472205 |
ggatagttgtccttgaacagtttgaacctgtagcgtttatgttcctcttaggagtatgttttgacatatttcttgcaccaagcttcaaagtgttcataaa |
37472106 |
T |
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| Q |
337 |
agtccgcatcagagacctagaaa |
359 |
Q |
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| T |
37472105 |
agtccgcatcagaaaccttgaaa |
37472083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 37472511 - 37472442
Alignment:
| Q |
52 |
ttactgcataagtctaacatatagccattgtaataataagataggaaagcaaaccaagatgaagaagaaat |
122 |
Q |
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| T |
37472511 |
ttaccgcataaatctaacatatagccactgtaacaa-aagatatgaaagcaaaccgatatgaaaaagaaat |
37472442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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