View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11459_low_4 (Length: 498)
Name: NF11459_low_4
Description: NF11459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11459_low_4 |
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| [»] scaffold1717 (1 HSPs) |
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| [»] scaffold1527 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 51 - 483
Target Start/End: Complemental strand, 37757501 - 37757069
Alignment:
| Q |
51 |
gattatgggaagccgtggattcggtgcgacgaagagaagttctaatgggaagcttggaagtgtgagtgattattgtgttcgtcattgtgtttgtcctgtt |
150 |
Q |
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| T |
37757501 |
gattatgggaagccgtggattcggtgcgacgaagagaagttctaatgggaagcttggaagtgtgagtgattattgtgttcgtcattgtgtttgtcctgtt |
37757402 |
T |
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| Q |
151 |
gtagttgtaaggtatccggaggagagtaatggcggcggcgccggagttgaagggaatgatggtgaaaaagttgaacttcatcctgttattgaggaagaac |
250 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37757401 |
gtagttgtaaggtatccggaggagagtaatggcggtggcgccggagttgaagggaatgatggtgaaaaagttgaacttcatcctgttattgaggaagaac |
37757302 |
T |
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| Q |
251 |
atgaagatgagtatcatgatgctgatgatgatgaacacaaaggtttaatcttgtaacttttttaactctaacttttaaacttgcaacgcaagcattataa |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37757301 |
atgaagatgagtatcatgatgctgatgatgatgaacacaaaggtttaatcttttaacttttttaactctaacttttaaacttgcaacgcaagcattataa |
37757202 |
T |
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| Q |
351 |
tttgttattttttcatgaaatgatgaatatttagtgtagtgaatattttctattggatggttacaatagtagagtatgttgtagttatttttaaaatatg |
450 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37757201 |
tttgatattttttcatgaaatgatgaatatttagtgtagtgaatattttctattggatggttacaatagtagagtatgttgtagttatttttaaaagatg |
37757102 |
T |
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| Q |
451 |
gttacaaagtaagcctacatgagaagatgatga |
483 |
Q |
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| T |
37757101 |
gttacaaagtaagcctacatgagaagatgatga |
37757069 |
T |
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Back To:
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Target: scaffold1717 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1717
Description:
Target: scaffold1717; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 460 - 397
Alignment:
| Q |
95 |
atgggaagcttggaagtgtgagtgattattgtgttcgtcattgtgtttgtcctgttgtagttgt |
158 |
Q |
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||||||||||||| ||||| |||||||| ||||| | ||||||||||||||||||||| ||||| |
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| T |
460 |
atgggaagcttgggagtgttagtgattactgtgtgcatcattgtgtttgtcctgttgttgttgt |
397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1527 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1527
Description:
Target: scaffold1527; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 706 - 643
Alignment:
| Q |
95 |
atgggaagcttggaagtgtgagtgattattgtgttcgtcattgtgtttgtcctgttgtagttgt |
158 |
Q |
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||||||||||||| ||||| |||||||| ||||| | ||||||||||||||||||||| ||||| |
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| T |
706 |
atgggaagcttgggagtgttagtgattactgtgtgcatcattgtgtttgtcctgttgttgttgt |
643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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