View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11459_low_5 (Length: 478)
Name: NF11459_low_5
Description: NF11459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11459_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 461
Target Start/End: Complemental strand, 44028968 - 44028520
Alignment:
| Q |
11 |
aataaatgaccagcacaacatgtcacatgccttagnnnnnnnnnccttgactaaatgttacaagccttagttaaatccccttaaatagcaaagtgtccaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44028968 |
aataaatgaccagcacaacatgtcacatgccttagtttttttt-ccttgactaaatgttacaagccttagttaaatccccttaaatagcaaagtgtccaa |
44028870 |
T |
|
| Q |
111 |
tattttcaatcttcttattcatactatgattaatttcattagcaataataatgttctcgtgaatacttacaaggaacaaacccaatttaaaaaggagaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44028869 |
tattttcaatcttcttattcatactatgattactttcattagcaataataatgttctcgtgaatacttacaaggaacaaacccaatttaaaaaggagaaa |
44028770 |
T |
|
| Q |
211 |
caataagagaaatatactctgccaattggttaacaatcaccttacagaaagaaatgagtcaaaattggttaacaaattcctgtctaagagtgttttatca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44028769 |
caataagagaaatatactctgccaattggttaacaatcaccttacagaaagaaatgagataaaattggttaacaaattcctgtctaagagtgttttatca |
44028670 |
T |
|
| Q |
311 |
tcttctagagctaagattatgatctttcctatgcaagtaagtgtcttggacagtaataacacccatgaatcattttactcccgctctttaaaactacatt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44028669 |
tcttctagagctaagattatgatctttcctatgcaagcaagtgtcttggacagtaataacacccatgaatcattttactcccgctctttaaaactacatt |
44028570 |
T |
|
| Q |
411 |
aactttttgcagaataaaaaatactagataatttgcatagcagattgttct |
461 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
44028569 |
aactttttgcagaata-aaaatactagataatttgcataggagattgttct |
44028520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University