View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11459_low_6 (Length: 442)
Name: NF11459_low_6
Description: NF11459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11459_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 38211463 - 38211652
Alignment:
| Q |
16 |
gacatcacatgcaactttataccaatttttcatcacagtattaggtgaattcaagtatgattgattttacataagacttgttgagatatttctaacacca |
115 |
Q |
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| T |
38211463 |
gacatcacatgcaactttataccaatttttcatcacagtattaggtgaattcaagtatgattgattttacataagacttgttgagatatttctaacacca |
38211562 |
T |
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| Q |
116 |
ttcaaaaaacacctcaaataagatgttttgggaactaattaaatgcaccaaaacatatccaaaatttgttctagtttgccaatgaaggac |
205 |
Q |
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| T |
38211563 |
ttcaaaaaacacctcaaatcagatgttttgggaactaattaaatgcaccaaaacatatccaaaatttgttctagtttgccaatgaaggac |
38211652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 276 - 426
Target Start/End: Original strand, 38211722 - 38211869
Alignment:
| Q |
276 |
tacgtacgaagtcattggtttgttcctcttttattttgtttgtttacaaaataaattcaaaacaatcacgaaactctgtgacaggttgaaaaacaatcac |
375 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38211722 |
tacgtacgaagtcattggtttgttcatcttttattttgtttgtttacaaaataaattcaaaacaatcacgaaactctatgacaggttgaaaaacaatcac |
38211821 |
T |
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| Q |
376 |
aaaactagcattgtggtcccaacaactcacaacaaaatcaaacaatatttg |
426 |
Q |
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| T |
38211822 |
aaaactagcattgtggtcc---caactcacaacaaaatcaaacaatatttg |
38211869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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