View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11459_low_8 (Length: 383)
Name: NF11459_low_8
Description: NF11459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11459_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 373
Target Start/End: Original strand, 43941463 - 43941815
Alignment:
| Q |
20 |
accatacactaataaacattaatcatcgaaaaattgacgtttttattcaatatttctgcttcaacttgaatttatacatcaaatcgtgatgtttaaaaat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43941463 |
accatacactaataaacattaatcatcgaaaaattgacgtttttattgaatatttctgcttcaacttgaatttatacatcaaatcgtgatgtttaaaaat |
43941562 |
T |
|
| Q |
120 |
tttatgttttttgtaccnnnnnnnntaattatgttttaagacgagactctgctcccaagaacttttttgagtataatggttaatattaaaaacaacaaat |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43941563 |
tttatgttttttgtaccaaaaaaaataattatgttttaagacgagactctgctcccaagaactttttttagtataatggttaatattaaaaacaacaaat |
43941662 |
T |
|
| Q |
220 |
ttacttaatattttagattacgaaacatgaattaaattcttgtaaagaagaactcatgagtaatttttaactaacaattgagatcgaccagaggcataat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43941663 |
ttacttaatattttagattacgaaacatgaat-aaattcttgtaaagaagaactcatgagtaatttttaactaacaattgagatcgaccagaggcataat |
43941761 |
T |
|
| Q |
320 |
gatcttttttggacattcatgtcattggtgcaaaatatttattggttacctttg |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43941762 |
gatcttttttggacattcatgtcattggtgcaaaatatttattggttacctttg |
43941815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University