View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11459_low_9 (Length: 381)
Name: NF11459_low_9
Description: NF11459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11459_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 47382697 - 47383049
Alignment:
| Q |
18 |
cattaaggcaagttatcatgaggatatttgaatttgcttcatcaatgcagacagaacatatcatgcctagtaggactcactattgtgtatatatccttga |
117 |
Q |
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| T |
47382697 |
cattaaggcaagttatcatgaggatatttgaatttgcttcatcaatgcagacagaacatatcatgcctagtaggactcactattgtgtatatatccttga |
47382796 |
T |
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| Q |
118 |
aatttcaaaccctacgcagaaaaataaaaggcattggatcttgttttgttggatctagattttcccaaaacacaatcatgatgcatggatcagacagccc |
217 |
Q |
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| T |
47382797 |
aatttcaaaccctacgcagaaaaataaaaggcattggatcttgttttgttggatctagattttcccaaaacacaatcatgatgcatggatcagacagccc |
47382896 |
T |
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| Q |
218 |
caaacacgtacctaaaccactattttagcgaatcataattcttgtaaaacattgattttccccccataacattttcttcaccatttgtatataaacatat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47382897 |
caaacacgtacctaaaccactattttagcgaatcataattcttgtaaaacattgatttttcccccataacattttcttcaccatttgtatataaacatat |
47382996 |
T |
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| Q |
318 |
aattcatcaagcacttactcttttatttcaaaggttttgtactcatgtttcat |
370 |
Q |
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| T |
47382997 |
aattcatcaagcacttactcttttatttcaaaggttttgtactcatgtttcat |
47383049 |
T |
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