View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1145_high_110 (Length: 225)

Name: NF1145_high_110
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1145_high_110
NF1145_high_110
[»] chr6 (2 HSPs)
chr6 (22-104)||(1722653-1722735)
chr6 (138-214)||(12335396-12335472)
[»] scaffold0385 (1 HSPs)
scaffold0385 (114-214)||(3435-3536)
[»] chr4 (2 HSPs)
chr4 (121-214)||(22196863-22196956)
chr4 (117-214)||(34014447-34014545)
[»] chr7 (4 HSPs)
chr7 (129-214)||(7283300-7283385)
chr7 (125-214)||(44233037-44233126)
chr7 (145-214)||(44522242-44522311)
chr7 (143-210)||(47801260-47801327)
[»] chr2 (3 HSPs)
chr2 (125-214)||(36965232-36965321)
chr2 (125-214)||(23910692-23910781)
chr2 (125-212)||(25603221-25603308)
[»] scaffold0343 (1 HSPs)
scaffold0343 (129-214)||(14635-14720)
[»] scaffold0123 (1 HSPs)
scaffold0123 (167-214)||(46211-46258)
[»] chr8 (1 HSPs)
chr8 (152-212)||(27421119-27421179)
[»] chr1 (1 HSPs)
chr1 (142-211)||(23027927-23027996)


Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 1722653 - 1722735
Alignment:
Q  22 tgtggggtggagaatatacataggtgctaatatatcacatgtttctaggtggcataaaacgtgaattgttcccttgattccat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1722653 tgtggggtggagaatatacataggtgctaatatatcacatgtttctaggtggcataaaacgtgaattgttcccttgattccat 1722735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 12335396 - 12335472
Alignment:
Q  138 tgcatgcttgggaggaggagagtgtcaccgaatgttctatcctattacataatgttgttttgcaggctaatgttcat 214  Q
    ||||||||||||||||||||||||||||  ||||||||||||| || ||| ||||||||||| ||||| || |||||    
T  12335396 tgcatgcttgggaggaggagagtgtcacgaaatgttctatccttttgcatgatgttgttttgtaggctcatattcat 12335472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 3536 - 3435
Alignment:
Q  114 gatgcgtgg-gatggcgtaggcgtctgcatgcttgggaggaggagagtgtcaccgaatgttctatcctattacataatgttgttttgcaggctaatgttc 212  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  3536 gatgcgtggagatggcgtaggcgcctgcatgcttgggaggaggagagtgtcactgaatgttctatcctattacatgatgttgttttgcaggctaatgttc 3437  T
Q  213 at 214  Q
    ||    
T  3436 at 3435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 22196863 - 22196956
Alignment:
Q  121 gggatggcgtaggcgtctgcatgcttgggaggaggagagtgtcaccgaatgttctatcctattacataatgttgttttgcaggctaatgttcat 214  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22196863 gggatggcgtaggcgcctgcatgcttgggaggaggagagtgtcactgaatgttctatcctattacatgatgttgttttgcaggctaatgttcat 22196956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 34014447 - 34014545
Alignment:
Q  117 gcgtggga-tggcgtaggcgtctgcatgcttgggaggaggagagtgtcaccgaatgttctatcctattacataatgttgttttgcaggctaatgttcat 214  Q
    |||||||| ||||||| |||| |||||||||||||||||||||||||| | |||||||||||||| || ||| ||||||||||||||||| || |||||    
T  34014447 gcgtgggactggcgtaagcgtatgcatgcttgggaggaggagagtgtcgcagaatgttctatccttttgcatgatgttgttttgcaggctcatattcat 34014545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 7283385 - 7283300
Alignment:
Q  129 gtaggcgtctgcatgcttgggaggaggagagtgtcaccgaatgttctatcctattacataatgttgttttgcaggctaatgttcat 214  Q
    ||||||| |||||| ||||| |||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7283385 gtaggcgcctgcatacttggaaggaggagagtgtcattgaatgttctatcctattacatgatgttgttttgcaggctaatgttcat 7283300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 44233037 - 44233126
Alignment:
Q  125 tggcgtaggcgtctgcatgcttgggaggaggagagtgtcaccgaatgttctatcctattacataatgttgttttgcaggctaatgttcat 214  Q
    ||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||| | ||| ||||||||||||||||| ||||||||    
T  44233037 tggcgtaggtgcctgcatgcttgggaggaggagagtgtcacagaatgttctatactactgcatgatgttgttttgcaggctcatgttcat 44233126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 44522311 - 44522242
Alignment:
Q  145 ttgggaggaggagagtgtcaccgaatgttctatcctattacataatgttgttttgcaggctaatgttcat 214  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||||    
T  44522311 ttgggaggaggagagtgtcactgaatgttctatcctattacatgatgctgttttgcaggctgatgttcat 44522242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 47801327 - 47801260
Alignment:
Q  143 gcttgggaggaggagagtgtcaccgaatgttctatcctattacataatgttgttttgcaggctaatgt 210  Q
    |||||||||||||| ||||| |  ||||| ||||| |||||||||||  |||||||||||| ||||||    
T  47801327 gcttgggaggaggaaagtgtgagggaatgctctattctattacataacattgttttgcaggataatgt 47801260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 36965321 - 36965232
Alignment:
Q  125 tggcgtaggcgtctgcatgcttgggaggaggagagtgtcaccgaatgttctatcctattacataatgttgttttgcaggctaatgttcat 214  Q
    ||||||||||| |||||||||||||||||||||||||||||  |||||||||| ||| | ||| ||||||||||||||||| ||||||||    
T  36965321 tggcgtaggcgcctgcatgcttgggaggaggagagtgtcacaaaatgttctatactactgcatgatgttgttttgcaggctcatgttcat 36965232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 23910692 - 23910781
Alignment:
Q  125 tggcgtaggcgtctgcatgcttgggaggaggagagtgtcaccgaatgttctatcctattacataatgttgttttgcaggctaatgttcat 214  Q
    ||||||||||| || ||||||||| |||||||||| || ||  |||||||||||||||| ||| ||||||||||||| ||||||||||||    
T  23910692 tggcgtaggcgccttcatgcttggaaggaggagagcgttacataatgttctatcctattgcatgatgttgttttgcatgctaatgttcat 23910781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 25603308 - 25603221
Alignment:
Q  125 tggcgtaggcgtctgcatgcttgggaggaggagagtgtcaccgaatgttctatcctattacataatgttgttttgcaggctaatgttc 212  Q
    ||||| ||||| |||||||||||| ||||||||||||||||  |||||||||| | | | ||| ||||||||||||||||| ||||||    
T  25603308 tggcggaggcgcctgcatgcttggcaggaggagagtgtcacaaaatgttctataccactgcatgatgttgttttgcaggctcatgttc 25603221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 14720 - 14635
Alignment:
Q  129 gtaggcgtctgcatgcttgggaggaggagagtgtcaccgaatgttctatcctattacataatgttgttttgcaggctaatgttcat 214  Q
    ||||||| || |||||||||||||||||||| || |  ||||||||||| ||||| ||| |||||||||||||||||| |||||||    
T  14720 gtaggcgccttcatgcttgggaggaggagagcgttaaagaatgttctattctattgcatgatgttgttttgcaggctattgttcat 14635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 46211 - 46258
Alignment:
Q  167 gaatgttctatcctattacataatgttgttttgcaggctaatgttcat 214  Q
    |||||||||||  |||||||||||||||||||||||| ||||||||||    
T  46211 gaatgttctattttattacataatgttgttttgcaggataatgttcat 46258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 27421179 - 27421119
Alignment:
Q  152 gaggagagtgtcaccgaatgttctatcctattacataatgttgttttgcaggctaatgttc 212  Q
    ||||||||||||||  |||||||||| ||| | ||| ||||||||||||||||| ||||||    
T  27421179 gaggagagtgtcacataatgttctatactactgcatgatgttgttttgcaggctcatgttc 27421119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 23027996 - 23027927
Alignment:
Q  142 tgcttgggaggaggagagtgtcaccgaatgttctatcctattacataatgttgttttgcaggctaatgtt 211  Q
    |||||||||||||||| ||||    || ||||| ||  |||||||||||||||||||||||| |||||||    
T  23027996 tgcttgggaggaggagtgtgtgcgggagtgttccatattattacataatgttgttttgcaggttaatgtt 23027927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University