View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_high_111 (Length: 224)
Name: NF1145_high_111
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_111 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 5408099 - 5408263
Alignment:
| Q |
1 |
ctgctaccaactatactcaacaatcaacgcaacacatccatgtttttagtcagaagatctaattaattaaccataaacaacaattaattttttgaaa-ga |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5408099 |
ctgctaccaactatactcaacaatcaacgcaacacatccatgtttttagtcagaagatctaattaattaaccataaacaacaattaattttttgaaagga |
5408198 |
T |
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| Q |
100 |
taaataaagtcaccttttgcaaaagaggaacatgatcatcaatggttgtgtcgtcacattttttg |
164 |
Q |
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| T |
5408199 |
taaataaagtcaccttttgcaaaaaaggaacatgatcatcaatggttgtggcatcacattttttg |
5408263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 5396679 - 5396506
Alignment:
| Q |
1 |
ctgctaccaactatactcaacaatcaacgcaacacatccatgttttt-agtcagaagatctaattaattaaccataaacaacaattaatttttt-gaaag |
98 |
Q |
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||||||||||||||| ||||||||||| |||| |||||||| ||||| ||| |||| ||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
5396679 |
ctgctaccaactatattcaacaatcaaagcaaaacatccattttttttagtgagaacatctaattaattaaccataaacaacaattaatttttttggaag |
5396580 |
T |
|
| Q |
99 |
ataaataaagtcaccttttgcaaaagaggaacatgatcatcaatggttgtgtcgtcacattttttggtagcatc |
172 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5396579 |
ataaacaaaatcaccttttgcaaaagaggaacatgatcatcaatggttgtgtcgtcacattttttggtagcatc |
5396506 |
T |
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