View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_high_119 (Length: 202)
Name: NF1145_high_119
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_119 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 37896099 - 37896272
Alignment:
| Q |
18 |
ataatctgatgagcaacatatctacatttgaactttca-ttgcattttgccagcaatatccatgccactattgttaaattttatgcttcatttttctttt |
116 |
Q |
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| T |
37896099 |
ataatctgatgagcaacatatctacatttgaactttcaattgcattttgcgagcaatatccatgccactattgttaaattttatgcttcatttttctttt |
37896198 |
T |
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| Q |
117 |
gcattccaaatctaaattaataaattgggcttgttcaattttgatggcttagttcaaatcagttaatattcttc |
190 |
Q |
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| T |
37896199 |
gcattccaaatctaaattaataaattgggcttgttcaattttgatggcttagttcaaatcagttaatattcttc |
37896272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 37898445 - 37898507
Alignment:
| Q |
113 |
ttttgcattccaaatctaaattaataaattgggcttgttcaattttgatggcttagttcaaat |
175 |
Q |
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| T |
37898445 |
ttttgcatttcaaatccaaattaataaattgggtttgttcaagattgatggcttagttcaaat |
37898507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 9581312 - 9581237
Alignment:
| Q |
107 |
tttttcttttgcattccaaatctaaattaataaattgggcttgttcaattttgatggcttagttcaaatcagttaat |
183 |
Q |
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| T |
9581312 |
tttttcttttgtatcccaaacctaaat-aataaacttggcttgttcaagcttggtggcttagttcaaatcaattaat |
9581237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 9587007 - 9586932
Alignment:
| Q |
107 |
tttttcttttgcattccaaatctaaattaataaattgggcttgttcaattttgatggcttagttcaaatcagttaat |
183 |
Q |
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| T |
9587007 |
tttttcttttgtatcccaaacctaaat-aataaacttggcttgttcaagcttggtggcttagttcaaatcaattaat |
9586932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 42447020 - 42447096
Alignment:
| Q |
111 |
tcttttgcattccaaatctaaattaataaattgggcttgttcaattttgatggcttagttcaaatcagttaatattc |
187 |
Q |
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| T |
42447020 |
tcttttgcatccaaaatccaaattaataaactgatcttgttcaagcttgatgacttagttcaaatcaattaatattc |
42447096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 42446836 - 42446893
Alignment:
| Q |
18 |
ataatctgatgagcaacatatctacatttgaactttcattgcattttgccagcaatat |
75 |
Q |
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| T |
42446836 |
ataatctgatgagcaacagatctatatttgatctgtcattacattctgccagcaatat |
42446893 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 29140910 - 29140968
Alignment:
| Q |
18 |
ataatctgatgagcaacatatctacatttgaactttcattgcattttgccagcaatatc |
76 |
Q |
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| T |
29140910 |
ataatctaatgagcaacaaatctctatttgaactttcattacattgtaccagcaatatc |
29140968 |
T |
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