View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_high_12 (Length: 555)
Name: NF1145_high_12
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 91 - 544
Target Start/End: Complemental strand, 35770572 - 35770120
Alignment:
| Q |
91 |
atagtaaactgcttccaccaagttgtgcaataatgatcaaatatctcatattttgaattgtcatcatgaaataaaaccattgagttttgaagttcagtct |
190 |
Q |
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| T |
35770572 |
atagtaaactgcttccaccaagttgtgcaataatgatcaaatatctcatattttgaattgtcatcatgaaataaaaccattgagttttgaagttcagtct |
35770473 |
T |
|
| Q |
191 |
ttacttggttcgcaaggttactctcaaaaagcatatattaattcttgttttgttgtatcggcatcctcttctgaatttccagaatatataccttttgcta |
290 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35770472 |
ttacttggttcgcaaggttactctcaaaa-gcatatattaattcttgttttgtagtatcggcatcctcttctgaatttccagaatatataccttttgcta |
35770374 |
T |
|
| Q |
291 |
gatcaagtagaacatcagtaggatttatggcgacagacagagaagtaattcataacatctgctaatagtaaaatcttctgaaacatgtgaaagagtttgc |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35770373 |
gatcaagtagaacatcagtaggatttatggcgacagacagagaagtaattcataacatctgctaacagtaaaatcttctgaaacatgtgaaagagtttgc |
35770274 |
T |
|
| Q |
391 |
tagaaggttgatgtatagtcattatgacagttcttccacctttagctaactcacacaaattcatcacaattctctttgctgtggttgaatcaagaccttt |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35770273 |
tagaaggttgatgtatagtcattatgacagttcttccacctttagctaactcacacaaattcatcacaattctctttgctgtggttgaatcaagacattt |
35770174 |
T |
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| Q |
491 |
agtaggctcatcaacaagcaatagacttgaattagttgacagctcttgtcctat |
544 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35770173 |
agtaggctcatcaacaagcaatagacttgaattagttaacagctcttgtcctat |
35770120 |
T |
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