View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_high_13 (Length: 543)
Name: NF1145_high_13
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 4e-95; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 329 - 529
Target Start/End: Complemental strand, 7161431 - 7161231
Alignment:
| Q |
329 |
ttgcaatataatatcaacaattttgccctagctagacagaatacttaagatttatttattttccttcggcttgctaaattatcatccctattttcctacg |
428 |
Q |
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| T |
7161431 |
ttgcaatataatatcaacaattttgccctagctagatagaatgcttaagatttatttattttcctacgacttgctaaattatcatccctattttcctacg |
7161332 |
T |
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| Q |
429 |
acttgcaatataatagttttagacgctttatttcgatgaatatttttagatctatgattgaaaatgacggtgaccgggtgaaatgatgatattagatttt |
528 |
Q |
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| T |
7161331 |
acttgcaatataatagttttagacgctttatttcgatgaatttttttagatctatgattgaaaatgacgatgaccgggtgaaatgatgatattagatttt |
7161232 |
T |
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| Q |
529 |
a |
529 |
Q |
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| T |
7161231 |
a |
7161231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 30 - 341
Target Start/End: Complemental strand, 7161771 - 7161448
Alignment:
| Q |
30 |
aatacaagtccatacttttaagagaaatgcttgtatgcacgacaa---------------caagcacgaatgttaatgacccttggatatgggaaacata |
114 |
Q |
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| T |
7161771 |
aatacaagtccatacttttaagagaaatgcttgtatgcacgacaataacacgcacgacaacaagcacgaatgttaatgacccttggatatgtgaaacata |
7161672 |
T |
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| Q |
115 |
gcactagattgattcnnnnnnnnnnnnnnnnnnaaggaagcactagattaattttctctctccccccatgtattgtatgtgaggttatcgacacaagtcg |
214 |
Q |
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| T |
7161671 |
gcactagattaattctttttttttttttttg--aaggaagcactagattaattttctctctccccccatatattgtatgtgaggttatctatacaagtcg |
7161574 |
T |
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| Q |
215 |
tgtgtttgtgggcaaaagagagtcgtgccatacagcacatctctaatggtgttatttttgtagctaataccagaaccatgttcacacgacaacaatagtt |
314 |
Q |
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| T |
7161573 |
tgtgttcgtgggcaaa-gagagtcgtgccatatagcacatctctaatggtgttatttttgcagcttaaaccagaaccatgttcacacgacaacaatagtt |
7161475 |
T |
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| Q |
315 |
ttagatgctggggtttgcaatataata |
341 |
Q |
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| T |
7161474 |
ttagatgctggggtttgcaatataata |
7161448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 7879496 - 7879458
Alignment:
| Q |
67 |
cacgacaacaagcacgaatg-ttaatgacccttggatat |
104 |
Q |
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| T |
7879496 |
cacgacaacaagcacgaatgtttaatgacccttggatat |
7879458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 14002753 - 14002713
Alignment:
| Q |
158 |
tagattaattttctctctccccccatgtattgtatgtgagg |
198 |
Q |
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| T |
14002753 |
tagattaattttctctctcctcccatgtattgtatgtgagg |
14002713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 21343404 - 21343364
Alignment:
| Q |
158 |
tagattaattttctctctccccccatgtattgtatgtgagg |
198 |
Q |
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| T |
21343404 |
tagattaattttctctctcctcccatgtattgtatgtgagg |
21343364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 21348269 - 21348229
Alignment:
| Q |
158 |
tagattaattttctctctccccccatgtattgtatgtgagg |
198 |
Q |
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| T |
21348269 |
tagattaattttctctctcctcccatgtattgtatgtgagg |
21348229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 44855280 - 44855202
Alignment:
| Q |
50 |
agagaaatgcttgtatgcacga---caacaagcacgaatgtt-aatgacccttggatatgggaaacatagcactagatt |
124 |
Q |
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| T |
44855280 |
agagaaatgattatatgcacgaggacaacaagcacgaatatttaatgacccttgaatatgtgaaacatactactagatt |
44855202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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