View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1145_high_19 (Length: 468)
Name: NF1145_high_19
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_19 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 25044481 - 25044919
Alignment:
| Q |
1 |
gcaattatcggcttcacacagttttctttgttgcaatgcacacatcttggcaatcttggattcatcaaaattcccggagccctatcatgcatggtattca |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
25044481 |
gcaattatcggcttcacactgttttctttgttgcaatgcacacatcttggcaatcttggattcatcaaaattcccggtgccctatcatgcatggtattca |
25044580 |
T |
|
| Q |
101 |
tgtttgtgaccaaatactgagcgattacatcaaattttgccaccaaatcgaaggacatttggaattttgtttggcaactcttgcattgaacctcgccggt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
25044581 |
tgtttgtgaccaaatactgagcgattacatcaaattttgccaccaaatcgaaggacatttgaaattttgtttggcaactcttgcattgaacctcaccggt |
25044680 |
T |
|
| Q |
201 |
gatgttaaagattccattttgtagaagatgactaaggttgtgaatttttgctcggcggtctgtagcccatacgaaagggactgggattggatcattacgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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|
| T |
25044681 |
gatgttaaagattccattttgtagaagatgactaaggttgtgaatttttgctcggcggtcggttgcccatacgaaagggactgggattggatcattacgt |
25044780 |
T |
|
| Q |
301 |
ggtagacctcgtcggcgaacacgaccagtattactgttagcagcgacctcttgacgtggtggaggagaatttgatgcaccagggagaaacatacgctgaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
25044781 |
ggtagacctcgtcggcgaacacgaccagtattactgttagcagcaacctcttgacgtggtggaggagaatttgatgcaccagggagaaacatacgttgaa |
25044880 |
T |
|
| Q |
401 |
atggtgttacagggttgttcatttttctgtggatggtta |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25044881 |
atggtgttacagggttgttcatttttctgtggatggtta |
25044919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 22 - 280
Target Start/End: Original strand, 25040764 - 25041022
Alignment:
| Q |
22 |
ttttctttgttgcaatgcacacatcttggcaatcttggattcatcaaaattcccggagccctatcatgcatggtattcatgtttgtgaccaaatactgag |
121 |
Q |
| |
|
||||||| |||||||||| |||| |||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||| |||| |
|
|
| T |
25040764 |
ttttcttgattgcaatgcaaacattttggcaattttggattcatcaaaatttgtggtgccctatcatgcatggtgttcatgtttgtaaccaaatattgag |
25040863 |
T |
|
| Q |
122 |
cgattacatcaaattttgccaccaaatcgaaggacatttggaattttgtttggcaactcttgcattgaacctcgccggtgatgttaaagattccattttg |
221 |
Q |
| |
|
|||| ||| ||||| ||| |||||| || ||||||||||| ||||||| |||||| ||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
25040864 |
agatttcattgaatttcaccaacaaatcaaaagacatttggaactttgttttgcaactattgcattgaacatcgccggtgatgttaaagattctgttttg |
25040963 |
T |
|
| Q |
222 |
tagaagatgactaaggttgtgaatttttgctcggcggtctgtagcccatacgaaaggga |
280 |
Q |
| |
|
|| |||||| | ||| |||| |||||||||||||| || || ||||||| |||||||| |
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|
| T |
25040964 |
taagagatgattgaggctgtggatttttgctcggcgatcggttgcccatatgaaaggga |
25041022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 50 - 271
Target Start/End: Original strand, 25042939 - 25043160
Alignment:
| Q |
50 |
gcaatcttggattcatcaaaattcccggagccctatcatgcatggtattcatgtttgtgaccaaatactgagcgattacatcaaattttgccaccaaatc |
149 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||||| ||||| |||||||||||||||||||| ||| |||||| |||||||| | ||||||||| |
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|
| T |
25042939 |
gcaatcttggatacatcaaaagcgttggtgccctatcatgtatggtgttcatgtttgtgaccaaatattgatagattacgtcaaatttcgtcaccaaatc |
25043038 |
T |
|
| Q |
150 |
gaaggacatttggaattttgtttggcaactcttgcattgaacctcgccggtgatgttaaagattccattttgtagaagatgactaaggttgtgaattttt |
249 |
Q |
| |
|
||| | ||||| ||| ||| ||||||||||||||| |||||| ||| |||| ||||||||||| |||| ||||||||| | || | | ||||||| |
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|
| T |
25043039 |
gaacgtcatttagaactttatttggcaactcttgcgttgaacgtcgatagtgacattaaagattccgttttagagaagatgattgagactatcaattttt |
25043138 |
T |
|
| Q |
250 |
gctcggcggtctgtagcccata |
271 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
25043139 |
tctcggcggttggtagcccata |
25043160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 6e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 28649958 - 28650394
Alignment:
| Q |
1 |
gcaattatcggcttcacacagttttctttgttgcaatgcacacatcttggcaatcttggattcatcaaaattcccggagccctatcatgcatggtattca |
100 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| || |||| |||||||||||| |||||||||||||| | || |||||||||||||||||||||| |
|
|
| T |
28649958 |
gcaattatcggcttcacattgttttcacgattgcattgaacacttcttggcaatctaggattcatcaaaatccatggtgccctatcatgcatggtattca |
28650057 |
T |
|
| Q |
101 |
tgtttgtgaccaaatactgagcgattacatcaaattttgccaccaaatcgaaggacatttggaattttgtttggcaactcttgcattgaacctcgccggt |
200 |
Q |
| |
|
||||| ||| | |||| |||| |||| |||| ||||| ||||| ||||| || |||||||||||||| ||||| ||||||||||||||||| || || | |
|
|
| T |
28650058 |
tgtttatgatcgaatattgagagattgcatcgaatttcgccacaaaatcaaacgacatttggaatttcgtttgacaactcttgcattgaacgtcacccat |
28650157 |
T |
|
| Q |
201 |
gatgttaaagattccattttgtagaagatgactaaggttgtg-aatttttgctcggcggtctgtagcccatacgaaagggactgggattggatcattacg |
299 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | |||||||| | |||||||||| |||| || ||||||| ||| ||| || |||||| ||||| |
|
|
| T |
28650158 |
gatgttaaagatttcattttgtagaagatgattgaggttgtgcattttttgctcgacggtaggttgcccataaaaaaaggatcggaattggactgttacg |
28650257 |
T |
|
| Q |
300 |
tggtagacctcgtcggcgaacacgaccagtattactgttagcagcgacctcttgacgtggtggaggagaatttgatgcaccagggagaaacatacgctga |
399 |
Q |
| |
|
|||| || | ||||||| | ||| | | || || ||||||| |||| | |||| |||||||||||| |||||||||| ||||||||||| |||||| |
|
|
| T |
28650258 |
tggtggatcccgtcggcaaccacaaattgcatgacggttagcaacgacgttttgaggtggtggaggaggatttgatgcattggggagaaacatgcgctga |
28650357 |
T |
|
| Q |
400 |
aatggtgttacagggttgttcatttttctgtggatgg |
436 |
Q |
| |
|
|||||||||||| ||||||||| ||| | ||||||| |
|
|
| T |
28650358 |
aatggtgttacaatgttgttcatgtttatttggatgg |
28650394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 10124357 - 10124627
Alignment:
| Q |
1 |
gcaattatcggcttcacacagttttctttgttgcaatgcacacatcttggcaatcttggattcatcaaaattcccggagccctatcatgcatggtattca |
100 |
Q |
| |
|
||||||| ||| |||||||||||||||| |||||||||||||| | ||||||||||| ||||||| | | || ||||||||||||||||| || | |
|
|
| T |
10124357 |
gcaattaccggtttcacacagttttcttgattgcaatgcacacacttcatcaatcttggatacatcaaagtctctggtgccctatcatgcatggtgttga |
10124456 |
T |
|
| Q |
101 |
tgtttgtgaccaaatactgagcgattacatcaaattttgccaccaaatcgaaggacatttggaattttgtttggcaactcttgcattgaacctcgccggt |
200 |
Q |
| |
|
|||||| || ||||| || | ||||||||| ||||| ||||||||||| || ||||| ||||| |||||||| ||||||||||||| ||| |||||||| |
|
|
| T |
10124457 |
agtttgtaactaaatattgggagattacatcgaatttcgccaccaaatcaaacgacatctggaactttgtttgacaactcttgcatttaacatcgccggt |
10124556 |
T |
|
| Q |
201 |
gatgttaaagattccattttgtagaagatgactaaggttgtgaatttttgctcggcggtctgtagcccata |
271 |
Q |
| |
|
|||||||||||||| ||||| |||||||| | | | |||||||||||||||||||||| || ||||||| |
|
|
| T |
10124557 |
gatgttaaagattctgttttggagaagatggttcaagctgtgaatttttgctcggcggtcggtggcccata |
10124627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 21393099 - 21392820
Alignment:
| Q |
1 |
gcaattatcggcttcacacagttttctttgttgcaatgcacacatcttggcaatcttggattcatcaaaattcccggagccctatcatgcatggtattca |
100 |
Q |
| |
|
||||||| ||| ||||||| |||||||| |||||||| |||||||||||| ||||||||||||||| || || ||||||||||||||||| |||| |
|
|
| T |
21393099 |
gcaattaccggtttcacactgttttcttgattgcaatgtgcacatcttggcagtcttggattcatcaagatctttggtgccctatcatgcatggtgttca |
21393000 |
T |
|
| Q |
101 |
tgtttgtgaccaaatactgagcgattacatcaaattttgccaccaaatcgaaggacatttggaattttgtttggcaactcttgcattgaacctcgccggt |
200 |
Q |
| |
|
|||| || |||||||| |||| ||||||||| ||||| | || |||||| | |||||| || |||||||||||||||||||||||||| |||||||| |
|
|
| T |
21392999 |
tgttcgtaaccaaatattgagagattacatcgaatttcgtacgcagatcgaacggcatttgaaactttgtttggcaactcttgcattgaacatcgccggt |
21392900 |
T |
|
| Q |
201 |
gatgttaaagattccattttgtagaagatgactaaggttgtgaatttttgctcggcggtctgtagcccatacgaaaggga |
280 |
Q |
| |
|
|||| |||||||| ||||||| |||||| | |||||||| |||||||||||| | | || ||||||| |||||||| |
|
|
| T |
21392899 |
gatgctaaagattttgttttgtaagagatgattgaggttgtggatttttgctcggtgattggttgcccatatgaaaggga |
21392820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 21422409 - 21422219
Alignment:
| Q |
1 |
gcaattatcggcttcacacagttttctttgttgcaatgcacacatcttggcaatcttggattcatcaaaattcccggagccctatcatgcatggtattca |
100 |
Q |
| |
|
|||||||| ||||| |||| |||||||| ||||||||||||||| | |||||| |||||||||||||| | | || ||||||||||||||| | |||| |
|
|
| T |
21422409 |
gcaattattggcttgacactgttttcttgattgcaatgcacacatttaggcaattttggattcatcaaattctctggtgccctatcatgcatgttgttca |
21422310 |
T |
|
| Q |
101 |
tgtttgtgaccaaatactgagcgattacatcaaattttgccaccaaatcgaaggacatttggaattttgtttggcaactcttgcattgaac |
191 |
Q |
| |
|
||||||| |||||||| ||| |||||||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
21422309 |
tgtttgtaaccaaatatcgagagattacatcaaattttgcttgcaaatcgaacgacatttggaactttgttcggcaactcttgcattgaac |
21422219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 3 - 260
Target Start/End: Original strand, 24690674 - 24690931
Alignment:
| Q |
3 |
aattatcggcttcacacagttttctttgttgcaatgcacacatcttggcaatcttggattcatcaaaattcccggagccctatcatgcatggtattcatg |
102 |
Q |
| |
|
||||| |||||||||| | |||||| |||||||| |||||| ||| ||||||||||||||||||||| ||||||||||||||||| |||| | |
|
|
| T |
24690674 |
aattaccggcttcacattggtttcttgattgcaatgtacacattttgacaatcttggattcatcaaaatctttcttgccctatcatgcatggtgttcaag |
24690773 |
T |
|
| Q |
103 |
tttgtgaccaaatactgagcgattacatcaaattttgccaccaaatcgaaggacatttggaattttgtttggcaactcttgcattgaacctcgccggtga |
202 |
Q |
| |
|
||||| ||||| || || | ||||| || ||||| ||| |||||| || || |||| ||| |||||||| ||||||||||||||||| || ||||| |
|
|
| T |
24690774 |
tttgtaaccaactattgggaaattacgtcgcatttttccaacaaatcaaaagatatttagaactttgtttgtcaactcttgcattgaacgtcattggtga |
24690873 |
T |
|
| Q |
203 |
tgttaaagattccattttgtagaagatgactaaggttgtgaatttttgctcggcggtc |
260 |
Q |
| |
|
||||||| ||| |||||||| |||||| | ||| ||||||||||||||||| |||| |
|
|
| T |
24690874 |
tgttaaaaattgtattttgtaagagatgattgaggctgtgaatttttgctcggtggtc |
24690931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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