View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_high_21 (Length: 463)
Name: NF1145_high_21
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 30 - 452
Target Start/End: Original strand, 450744 - 451166
Alignment:
| Q |
30 |
ttgagcagctataatgtcattgcatttacaatacatttctaccaaagctccaccgacaaaactgttggattgcagacctttgacaattgcaatagaatgt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
450744 |
ttgagcagctataatgtcattgcatttacaatacatttctaccaaagctccaccgacaaaactgttggattgcagacctttgacaattgcaatagaatgt |
450843 |
T |
|
| Q |
130 |
atctctttcccttgtcgaatgcaagtcatatcagcacatccagtaaggatacttccaagagtgaatgaatcaggttcaattccttccatgagtaaatctc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
450844 |
atctctttcccttgtcgaatgcaagtcatatcagcaaatccagtaaggatacttccaagagtgaatgaatcaggttcaattccttccatgagtaaatctc |
450943 |
T |
|
| Q |
230 |
gaaacaacatcagagcatcatcaaacatgaaattatcaacatgtcctgatatcatacaattccatgatattctatccctctccacgccttcttgttccat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
450944 |
gaaacaacatcagagcatcatcaaacatgaaattatcaacatgtcctgatatcatacaattccatgatattctatccctctccacgccttcttgttccat |
451043 |
T |
|
| Q |
330 |
ctgataaaacagttcctttgccttcccgacatttccattttccaaatatccaactatcatagtattgtatgacgctgcacatttcctcgcaaacttggaa |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
451044 |
ctgataaaacagttcctttgccttcccgacatttccattttccaaatatccaactatcatggtattgtatgacgctgcacatttcctcgcaaacttggaa |
451143 |
T |
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| Q |
430 |
aatatttcgaaggcgcttttcat |
452 |
Q |
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||||||| ||||||||||||||| |
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| T |
451144 |
aatattttgaaggcgcttttcat |
451166 |
T |
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