View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_high_22 (Length: 460)
Name: NF1145_high_22
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 54075252 - 54074935
Alignment:
| Q |
1 |
gaaaacctcttgaacagagcttgtaacggcggtgcgaattccgtctcctatttggaaaacacagttaagctccttcgccggcctgtcgtagccttgacga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54075252 |
gaaaacctcttgaacagagcttgtaacggcggtgcgaattccgtctcctatttggaaaacacagttaagctccttcgccggcctgtcgtagccttgacga |
54075153 |
T |
|
| Q |
101 |
tgattcacacctttggcaaacaaaacgacgtcgtcttccattgaaaaagactcgtaaacaacaaaattccacctcacaagctccgtcgccggagaatgat |
200 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
54075152 |
tgattaacacctttggcaaacaaaactacgtcgtcttccattgaaaaagactcgtaaacaacaaaattccacctcacaagctccgccgccggagaatgat |
54075053 |
T |
|
| Q |
201 |
tttgaaattcattttccgacgttccggttaccaacataggttgcgaaaatattttccggcgccaaaccgtactcggcatgtcgcacttgaacgttgtacg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
54075052 |
tttgaaattcattttccgacgttccggttaccaacataggttgcgaaaatattttccggcgccaaaccgtacccggcatgtcgcacttgaacgttgtacg |
54074953 |
T |
|
| Q |
301 |
gttggtgaaaggtaaaac |
318 |
Q |
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|||||||||||||||||| |
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| T |
54074952 |
gttggtgaaaggtaaaac |
54074935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 3229393 - 3229482
Alignment:
| Q |
94 |
ttgacgatgattcacacctttggcaaacaaaacgacgtcgtcttccattgaaaaagactcgtaaacaacaaaattccacctcacaagctc |
183 |
Q |
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| T |
3229393 |
ttgacgatgattcacacctttggcaaacaaaacgacgtcgtcctccattgaaaaagactcgtaaacaacaaaattccacctcacaagctc |
3229482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34849782 - 34849736
Alignment:
| Q |
1 |
gaaaacctcttgaacagagcttgtaacggcggtgcgaattccgtctc |
47 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
34849782 |
gaaaacctcttgaacggagcttgtaacggcggtgcgaattacgtctc |
34849736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 48529213 - 48529259
Alignment:
| Q |
1 |
gaaaacctcttgaacagagcttgtaacggcggtgcgaattccgtctc |
47 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
48529213 |
gaaaacctcttgaatggagcttgtaacggcggtgcaaattccgtctc |
48529259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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