View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_high_24 (Length: 457)
Name: NF1145_high_24
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_24 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 6678 - 6236
Alignment:
| Q |
1 |
ctattatagcaatttgatccacaagaacttttactctatcctccatattcccgtgttcatcccacacccaagaattgttcgcctttttcaacctccttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
6678 |
ctattatagcaatttgatccacaagaacttttactctatcctccatattcccgtgttcatcccacacccaagaattgttctcctttttcaacttccttaa |
6579 |
T |
|
| Q |
101 |
tttcatacccatgttatacccaattcattgatacgagcaaggatataagctgcaattaagaggttctcatttttaggaggttctcattctctgtcctaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
6578 |
tttcatacccatgttatacccaattcattgatacgagcaaggatataggctgcaattaagaggttctcattcttaggaggttctcattctctgtcctata |
6479 |
T |
|
| Q |
201 |
acagagaataatcaatcttttacttatcatttggtgctctcgtccttgaacacctcccaagacaaatccattccattcatcctacattgttccatgttat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6478 |
acagagaataatcaatcttttacttatcatttggtgctctcgtccttgaacacctccgaagacaaatccattccattcatcctacattgttccatgttat |
6379 |
T |
|
| Q |
301 |
ccgactatctcttctgccttcccttcaccgccatctcccaacccatatccatctagctatgataatccaactttctgcatggcttgcaacaaccgcaatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6378 |
ccgactatctcttctgccttcccttcaccgccatctcccaacccatatccatctagctatgataatccaactttatgcatggcttgcaacaaccgcaatt |
6279 |
T |
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| Q |
401 |
ctgctgcagatctgattgaaaagcttgatgcatttgtgcaaca |
443 |
Q |
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| T |
6278 |
ctgctgcagatccgattgaaaagcttgatgcatttgtgcaaca |
6236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 23385790 - 23386232
Alignment:
| Q |
1 |
ctattatagcaatttgatccacaagaacttttactctatcctccatattcccgtgttcatcccacacccaagaattgttcgcctttttcaacctccttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
23385790 |
ctattatagcaatttgatccacaagaacttttactctatcctccatattcccgtgttcatcccacacccaagaattgttctcctttttcaacttccttaa |
23385889 |
T |
|
| Q |
101 |
tttcatacccatgttatacccaattcattgatacgagcaaggatataagctgcaattaagaggttctcatttttaggaggttctcattctctgtcctaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
23385890 |
tttcatacccatgttatacccaattcattgatacgagcaaggatataggctgcaattaagaggttctcattcttaggaggttctcattctctgtcctata |
23385989 |
T |
|
| Q |
201 |
acagagaataatcaatcttttacttatcatttggtgctctcgtccttgaacacctcccaagacaaatccattccattcatcctacattgttccatgttat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23385990 |
acagagaataatcaatcttttacttatcatttggtgctctcgtccttgaacacctccgaagacaaatccattccattcatcctacattgttccatgttat |
23386089 |
T |
|
| Q |
301 |
ccgactatctcttctgccttcccttcaccgccatctcccaacccatatccatctagctatgataatccaactttctgcatggcttgcaacaaccgcaatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23386090 |
ccgactatctcttctgccttcccttcaccgccatctcccaacccatatccatctagctatgataatccaactttatgcatggcttgcaacaaccgcaatt |
23386189 |
T |
|
| Q |
401 |
ctgctgcagatctgattgaaaagcttgatgcatttgtgcaaca |
443 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23386190 |
ctgctgcagatccgattgaaaagcttgatgcatttgtgcaaca |
23386232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 198
Target Start/End: Original strand, 22431370 - 22431399
Alignment:
| Q |
169 |
atttttaggaggttctcattctctgtccta |
198 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
22431370 |
atttttaggaggttctcattctctgtccta |
22431399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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