View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1145_high_26 (Length: 443)

Name: NF1145_high_26
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1145_high_26
NF1145_high_26
[»] chr3 (20 HSPs)
chr3 (98-433)||(18537740-18538077)
chr3 (235-433)||(10578457-10578657)
chr3 (235-433)||(15341344-15341544)
chr3 (235-433)||(17780243-17780443)
chr3 (235-433)||(19081544-19081744)
chr3 (235-433)||(15356711-15356911)
chr3 (235-430)||(1646624-1646821)
chr3 (235-433)||(15600009-15600209)
chr3 (235-433)||(15606554-15606754)
chr3 (235-433)||(10571691-10571892)
chr3 (235-430)||(17196876-17197073)
chr3 (235-433)||(16481583-16481783)
chr3 (235-433)||(32056170-32056370)
chr3 (235-398)||(17137260-17137426)
chr3 (235-433)||(6110971-6111182)
chr3 (235-430)||(13517689-13517888)
chr3 (235-354)||(13212210-13212331)
chr3 (235-353)||(23014548-23014668)
chr3 (312-419)||(16201180-16201288)
chr3 (382-433)||(13212331-13212382)
[»] chr8 (8 HSPs)
chr8 (235-433)||(6095028-6095228)
chr8 (235-433)||(21941547-21941749)
chr8 (235-433)||(22172367-22172567)
chr8 (235-430)||(15327105-15327302)
chr8 (235-430)||(15507474-15507671)
chr8 (235-433)||(28548929-28549130)
chr8 (235-352)||(24643504-24643624)
chr8 (312-432)||(29230378-29230495)
[»] chr4 (23 HSPs)
chr4 (237-433)||(10620433-10620631)
chr4 (237-433)||(10627515-10627713)
chr4 (235-433)||(8859074-8859274)
chr4 (235-430)||(4425743-4425940)
chr4 (235-430)||(8846085-8846282)
chr4 (235-433)||(28392267-28392467)
chr4 (235-433)||(19919631-19919831)
chr4 (235-433)||(19925860-19926060)
chr4 (238-433)||(869506-869703)
chr4 (235-433)||(5708219-5708419)
chr4 (235-433)||(18269955-18270155)
chr4 (235-433)||(5714854-5715055)
chr4 (235-433)||(55613590-55613790)
chr4 (235-433)||(18263094-18263294)
chr4 (235-433)||(26971345-26971547)
chr4 (275-424)||(5667202-5667354)
chr4 (372-433)||(26964592-26964653)
chr4 (312-423)||(47388065-47388176)
chr4 (235-280)||(5667385-5667430)
chr4 (235-289)||(10676851-10676905)
chr4 (235-289)||(10890491-10890545)
chr4 (253-347)||(35224456-35224553)
chr4 (235-284)||(47388244-47388294)
[»] chr1 (9 HSPs)
chr1 (235-433)||(18531638-18531839)
chr1 (235-433)||(18252912-18253112)
chr1 (233-433)||(27130509-27130711)
chr1 (235-430)||(27309681-27309877)
chr1 (235-430)||(16358163-16358360)
chr1 (235-422)||(9076013-9076202)
chr1 (312-407)||(36815748-36815843)
chr1 (235-284)||(36815911-36815960)
chr1 (372-404)||(27276691-27276723)
[»] scaffold0390 (2 HSPs)
scaffold0390 (235-433)||(6034-6234)
scaffold0390 (235-433)||(13050-13250)
[»] scaffold0061 (1 HSPs)
scaffold0061 (235-433)||(5321-5521)
[»] chr6 (13 HSPs)
chr6 (235-433)||(17690565-17690765)
chr6 (235-433)||(27380352-27380552)
chr6 (235-433)||(27470735-27470935)
chr6 (235-433)||(29309772-29309972)
chr6 (235-433)||(29316731-29316931)
chr6 (252-433)||(27297558-27297741)
chr6 (235-423)||(11652580-11652770)
chr6 (235-430)||(17683585-17683782)
chr6 (235-430)||(25536292-25536490)
chr6 (235-315)||(16558717-16558797)
chr6 (235-280)||(28755534-28755579)
chr6 (272-352)||(16393660-16393743)
chr6 (312-351)||(18336553-18336592)
[»] scaffold0234 (2 HSPs)
scaffold0234 (235-433)||(10337-10537)
scaffold0234 (235-433)||(1444-1646)
[»] chr7 (14 HSPs)
chr7 (235-432)||(11535188-11535387)
chr7 (235-432)||(11542106-11542305)
chr7 (235-433)||(29328666-29328870)
chr7 (235-432)||(12739424-12739623)
chr7 (235-433)||(18561913-18562115)
chr7 (235-398)||(24850719-24850884)
chr7 (235-432)||(12751741-12751940)
chr7 (235-433)||(11557198-11557392)
chr7 (237-420)||(15153352-15153536)
chr7 (360-433)||(2653113-2653186)
chr7 (357-433)||(9978834-9978910)
chr7 (272-406)||(13393080-13393217)
chr7 (235-289)||(13393006-13393060)
chr7 (293-341)||(9978782-9978832)
[»] scaffold1199 (1 HSPs)
scaffold1199 (237-433)||(4-207)
[»] chr5 (5 HSPs)
chr5 (235-432)||(19706298-19706497)
chr5 (235-433)||(19713625-19713823)
chr5 (235-433)||(24694585-24694783)
chr5 (235-433)||(24701349-24701547)
chr5 (235-424)||(18565594-18565791)
[»] chr2 (4 HSPs)
chr2 (235-420)||(21329380-21329569)
chr2 (235-430)||(22790961-22791158)
chr2 (371-431)||(41664786-41664846)
chr2 (235-285)||(18620681-18620730)
[»] scaffold0433 (1 HSPs)
scaffold0433 (235-433)||(7989-8190)
[»] scaffold0008 (1 HSPs)
scaffold0008 (235-430)||(229515-229716)
[»] scaffold0220 (1 HSPs)
scaffold0220 (235-433)||(19194-19395)
[»] scaffold0063 (1 HSPs)
scaffold0063 (235-430)||(6404-6607)
[»] scaffold0386 (1 HSPs)
scaffold0386 (102-230)||(2856-2986)
[»] scaffold0032 (1 HSPs)
scaffold0032 (312-433)||(107372-107494)
[»] scaffold0502 (1 HSPs)
scaffold0502 (312-433)||(10-128)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 98 - 433
Target Start/End: Original strand, 18537740 - 18538077
Alignment:
Q  98 attattttgtgaaacctacttttcgaattattccaccttttacctaagatccattataacctaaacaacgtatttatactgnnnnnnngaattgaaataa 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||| ||||||    
T  18537740 attattttgtgaaacctacttttcgaattattccaccttttacctaagatccattataacctaaacaacgcatttatactgtttttttgaattaaaataa 18537839  T
Q  198 aaagatatatttatttgtgcatgtttttaaagatccattattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagt 297  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||  ||||| |||||    
T  18537840 aaatatatatttatttgtgcatgtttttaaagatccattattatttaatttaagtaaaatagagaaacgcggttcaccgtaaggtacagtgtagttaagt 18537939  T
Q  298 gttgtcttgctgacc--acaagtgattctataaatagaactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtg 395  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18537940 gttgtcttgctgaccgcacaagtgattctataaatagaactcttgtgctgaagcattatgaaccttttgtgagtgcttaacctaattcacaaaagttgtg 18538039  T
Q  396 aaatcctagccgtcgctctctaaaccttggtctctctg 433  Q
    ||| ||||||||||||||||||||||||||||||||||    
T  18538040 aaaccctagccgtcgctctctaaaccttggtctctctg 18538077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 10578657 - 10578457
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  10578657 ttattatttaatttaccaaaaatagagaaacgcggttcaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 10578558  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  10578557 aacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctct 10578458  T
Q  433 g 433  Q
    |    
T  10578457 g 10578457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 15341544 - 15341344
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  15341544 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 15341445  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  15341444 aacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctct 15341345  T
Q  433 g 433  Q
    |    
T  15341344 g 15341344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 17780443 - 17780243
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||| ||||||||  |||||||||||||||||    
T  17780443 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgttgaccacacaagtgattctataaatag 17780344  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |||||||    
T  17780343 aacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaactttgttctctct 17780244  T
Q  433 g 433  Q
    |    
T  17780243 g 17780243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 19081744 - 19081544
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||| ||||||||  |||||||||||||||||    
T  19081744 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgttgaccacacaagtgattctataaatag 19081645  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |||||||    
T  19081644 aacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaactttgttctctct 19081545  T
Q  433 g 433  Q
    |    
T  19081544 g 19081544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 15356911 - 15356711
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  ||| |||||||||| || |||||  |||||||||||||||||    
T  15356911 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaattgttgtcttgttgtccacacaagtgattctataaatag 15356812  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  15356811 aacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctct 15356712  T
Q  433 g 433  Q
    |    
T  15356711 g 15356711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 235 - 430
Target Start/End: Complemental strand, 1646821 - 1646624
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| || |  |||||||||||||||||||||||  |||||||||||||||||    
T  1646821 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgcatttaagtgttgtcttgctgaccacacaagtgattctataaatag 1646722  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctct 430  Q
    ||| |||||| ||||||||||  ||  ||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||||    
T  1646721 aacccttgtgttgaagcattactaattttttgtgagtgcttaacctaattaacaaaagttgtgaaaccctagtcgtcgctctctaaaccttgttctct 1646624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 15600209 - 15600009
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| | ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  15600209 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtatggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 15600110  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| |||| |||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  15600109 aacccttgtgttgaaacattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctct 15600010  T
Q  433 g 433  Q
    |    
T  15600009 g 15600009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 15606754 - 15606554
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| | ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  15606754 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtatggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 15606655  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| |||| |||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  15606654 aacccttgtgttgaaacattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctct 15606555  T
Q  433 g 433  Q
    |    
T  15606554 g 15606554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 10571892 - 10571691
Alignment:
Q  235 ttattatttaatttacgaaaaa-tagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaata 331  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||  ||||  |||||||||||||| || |||||  ||||||||||||||||    
T  10571892 ttattatttaatttaccaaaaaatagagaaacgcggttcaccgtaaggtacagtgtatttaagtgttgtcttgttgtccacacaagtgattctataaata 10571793  T
Q  332 gaactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctc 431  Q
    |||| |||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||    
T  10571792 gaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctc 10571693  T
Q  432 tg 433  Q
    ||    
T  10571692 tg 10571691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 235 - 430
Target Start/End: Complemental strand, 17197073 - 17196876
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgacca--caagtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||  ||||  |||||||||||||||||||||  |||||||||||||||||||    
T  17197073 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtactgtgtatttaagtgttgtcttgctgaccagacaagtgattctataaatag 17196974  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctct 430  Q
    ||| |||||| ||||||||||  ||| ||||||  ||| ||||| ||||||||||||||||||||| |||||||| |||||||||||||||| |||||    
T  17196973 aacccttgtgttgaagcattactaactttttgtttgtgcttaacttaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctct 17196876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 16481783 - 16481583
Alignment:
Q  235 ttattatttaatttacgaaaaata-gagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaata 331  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||  |||||||||||||| || |||||  ||||||||||||||||    
T  16481783 ttattatttaatttacgaaaaataagagaaacgcggttcaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaata 16481684  T
Q  332 gaactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctc 431  Q
    |||| |||||| ||||||||||   || ||||||||||| ||||||||||||||||||||||||||| |  ||||| |||||||||||||||| ||||||    
T  16481683 gaacccttgtgttgaagcattacttactttttgtgagtgcttaacctaattcacaaaagttgtgaaa-ctcagccgccgctctctaaaccttgttctctc 16481585  T
Q  432 tg 433  Q
    ||    
T  16481584 tg 16481583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 32056370 - 32056170
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    ||||||||||||||||||||||||||||||||| || ||| |||||||||  ||||  |||||||||||||||||| ||||  |||||||||||||||||    
T  32056370 ttattatttaatttacgaaaaatagagaaacgcagtccactgtaaggtacagtgtatttaagtgttgtcttgctgatcacacaagtgattctataaatag 32056271  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| | ||||||||  ||| |||||||| || ||||||||||||||||||||||||||  |||||||| |||||||||||||||| |||||||    
T  32056270 aacccttgtgttcaagcattactaactttttgtgattgcttaacctaattcacaaaagttgtgaagccctagccgccgctctctaaaccttgttctctct 32056171  T
Q  433 g 433  Q
    |    
T  32056170 g 32056170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 235 - 398
Target Start/End: Original strand, 17137260 - 17137426
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccac---aagtgattctataaata 331  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  ||||||||||||||||||||||   |||||||| ||||||||    
T  17137260 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgctgaccacacaaagtgattttataaata 17137359  T
Q  332 gaactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaa 398  Q
    |||| |||||| ||||||||||  ||| ||||||||||| ||||||||||| |||||||||||||||    
T  17137360 gaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattaacaaaagttgtgaaa 17137426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 235 - 433
Target Start/End: Original strand, 6110971 - 6111182
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaatag 332  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||  |||||||||||||| || |  |||||||||||||||||||||    
T  6110971 ttattatttaatttaccaaaaatagagaaacgcggttcaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 6111070  T
Q  333 aactcttgtgctgaagcatt-----------atgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaacc 421  Q
    ||| |||||| |||||||||           |  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||     
T  6111071 aacccttgtgttgaagcattaccaaaaaaaaaaaaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaact 6111170  T
Q  422 ttggtctctctg 433  Q
    ||| ||||||||    
T  6111171 ttgttctctctg 6111182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 235 - 430
Target Start/End: Original strand, 13517689 - 13517888
Alignment:
Q  235 ttattatttaatttacgaaaa--atagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaat 330  Q
    |||||||||||||||||||||  ||||||||||||||| |||||||||||||| ||||  |||||||||| ||||||||  |||||||  ||||||||||    
T  13517689 ttattatttaatttacgaaaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgttttgctgaccacacaagtatttctataaat 13517788  T
Q  331 agaactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctct 430  Q
    ||||| |||||| |||||||| |  ||| |  |||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||| ||| |||||    
T  13517789 agaacccttgtgttgaagcatgactaacttaatgtgagtgctaaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacattgttctct 13517888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 235 - 354
Target Start/End: Original strand, 13212210 - 13212331
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctg--accacaagtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||| ||    |||||||||||||||||||||    
T  13212210 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgttgttcacacaagtgattctataaatag 13212309  T
Q  333 aactcttgtgctgaagcattat 354  Q
    ||| |||||| |||||||||||    
T  13212310 aacccttgtgttgaagcattat 13212331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 235 - 353
Target Start/End: Complemental strand, 23014668 - 23014548
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaatag 332  Q
    ||||||||||||||||||||||||||||||||| ||  || |||||||| ||||||  |||||| |   ||||||||  |||||||| ||||||||||||    
T  23014668 ttattatttaatttacgaaaaatagagaaacgcagtctactgtaaggtatgatgtatttaagtggttggttgctgaccacacaagtggttctataaatag 23014569  T
Q  333 aactcttgtgctgaagcatta 353  Q
    ||| |||||||||||||||||    
T  23014568 aacccttgtgctgaagcatta 23014548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 312 - 419
Target Start/End: Original strand, 16201180 - 16201288
Alignment:
Q  312 cacaagtgattctataaatagaactcttgtgctgaagcattatgaaccttttgtga-gtgtttaacctaattcacaaaagttgtgaaatcctagccgtcg 410  Q
    ||||||||||||||||||| |||| |||||||||||| |||||  || |||  ||| ||| ||||||||||||||||||||||||||| |||||||| ||    
T  16201180 cacaagtgattctataaattgaacccttgtgctgaagtattatagacttttgttgaagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 16201279  T
Q  411 ctctctaaa 419  Q
    |||||||||    
T  16201280 ctctctaaa 16201288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 433
Target Start/End: Original strand, 13212331 - 13212382
Alignment:
Q  382 tcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctctg 433  Q
    ||||||||||||||||| |||||||| |||||||||||| ||| ||||||||    
T  13212331 tcacaaaagttgtgaaaccctagccgccgctctctaaactttgttctctctg 13212382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 235 - 433
Target Start/End: Original strand, 6095028 - 6095228
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||||  |||||||||||||||||    
T  6095028 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgctgaccacacaagtgattctataaatag 6095127  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||  |||||||    
T  6095128 aacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttcttctctct 6095227  T
Q  433 g 433  Q
    |    
T  6095228 g 6095228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 235 - 433
Target Start/End: Original strand, 21941547 - 21941749
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaatag 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| || |  |||||||||||||||||||||    
T  21941547 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 21941646  T
Q  333 aactcttgtgctgaagcattatgaacc--ttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctct 430  Q
    ||| |||||| ||||||||||  ||||  ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||    
T  21941647 aacccttgtgttgaagcattactaaccctttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctct 21941746  T
Q  431 ctg 433  Q
    |||    
T  21941747 ctg 21941749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 235 - 433
Target Start/End: Original strand, 22172367 - 22172567
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  22172367 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 22172466  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  || |||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  22172467 aacccttgtgttgaagcattactaatcttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctct 22172566  T
Q  433 g 433  Q
    |    
T  22172567 g 22172567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 235 - 430
Target Start/End: Original strand, 15327105 - 15327302
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||||||||||||||  |||||||||||||||||    
T  15327105 ttattatttaatttacgaaaaatagagaaacgcggtctaccgtaaggtacggtgtatttaagtgttgtcttgctgaccacacaagtgattctataaatag 15327204  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctct 430  Q
    |||  ||||| ||||||||||  ||||||||||||||| ||||||||||||||||||||||||||| |||||| | ||||||||||| |||| |||||    
T  15327205 aacctttgtgttgaagcattactaaccttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagctgccgctctctaaaacttgttctct 15327302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 235 - 430
Target Start/End: Original strand, 15507474 - 15507671
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||||||||||||||  |||||||||||||||||    
T  15507474 ttattatttaatttacgaaaaatagagaaacgcggtctaccgtaaggtacggtgtatttaagtgttgtcttgctgaccacacaagtgattctataaatag 15507573  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctct 430  Q
    |||  ||||| ||||||||||  ||||||||||||||| ||||||||||||||||||||||||||| |||||| | ||||||||||| |||| |||||    
T  15507574 aacctttgtgttgaagcattactaaccttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagctgccgctctctaaaacttgttctct 15507671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 235 - 433
Target Start/End: Original strand, 28548929 - 28549130
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaatag 332  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||  || ||||||||||||||||||    
T  28548929 ttattatttgatttacgaaaaatagagaaacgcggtccaccgtaaggtacgatgtatttaagtgttgtcttgctgactacataagtgattctataaatag 28549028  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcac-aaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctc 431  Q
    ||| |||||| |||||||| |  ||| ||||||||||| |||||||||||||| ||||||||||||| |||||||| |||||||||||||| | ||||||    
T  28549029 aacccttgtgttgaagcatgactaacattttgtgagtgcttaacctaattcacaaaaagttgtgaaaccctagccgccgctctctaaacctggttctctc 28549128  T
Q  432 tg 433  Q
    ||    
T  28549129 tg 28549130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 352
Target Start/End: Original strand, 24643504 - 24643624
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtg-ttgtcttgctgaccaca--agtgattctataaata 331  Q
    ||||||||||||||| ||||||||||| || | ||| |||||||| ||||| ||||  |||||| ||| |||| ||| ||||  |||| |||||||||||    
T  24643504 ttattatttaatttaagaaaaatagagtaatgaggtccaccgtaaagtacggtgtatttaagtgattggcttgttgatcacacaagtggttctataaata 24643603  T
Q  332 gaactcttgtgctgaagcatt 352  Q
    |||| ||| ||||||||||||    
T  24643604 gaacccttatgctgaagcatt 24643624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 432
Target Start/End: Original strand, 29230378 - 29230495
Alignment:
Q  312 cacaagtgattctataaatagaactcttgtgctgaagcatta-tgaaccttttgtga--gtgtttaacctaattcacaaaagttgtgaaatcctagccgt 408  Q
    ||||||||||||||||||||||||    ||| |||||||||| |||  ||||||| |  ||| ||||||||| | ||||||||||||||| ||||||||     
T  29230378 cacaagtgattctataaatagaac----gtgatgaagcattactga--cttttgttaaagtgcttaacctaactaacaaaagttgtgaaaccctagccgc 29230471  T
Q  409 cgctctctaaaccttggtctctct 432  Q
    |||||  ||||||||| |||||||    
T  29230472 cgctccttaaaccttgttctctct 29230495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 237 - 433
Target Start/End: Complemental strand, 10620631 - 10620433
Alignment:
Q  237 attatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatagaa 334  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||||  |||||||||||||||||||    
T  10620631 attatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgctgaccacacaagtgattctataaatagaa 10620532  T
Q  335 ctcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctctg 433  Q
    | |||||| ||||||||||   || ||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  10620531 cccttgtgttgaagcattactgactttttgtgagtgcttgacctaattcacaaaagttgtgaaaccctagccgtcgctctctaaaccttgttctctctg 10620433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 237 - 433
Target Start/End: Complemental strand, 10627713 - 10627515
Alignment:
Q  237 attatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatagaa 334  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||||  |||||||||||||||||||    
T  10627713 attatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgctgaccacacaagtgattctataaatagaa 10627614  T
Q  335 ctcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctctg 433  Q
    | |||||| ||||||||||   || ||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  10627613 cccttgtgttgaagcattactgactttttgtgagtgcttgacctaattcacaaaagttgtgaaaccctagccgtcgctctctaaaccttgttctctctg 10627515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 235 - 433
Target Start/End: Original strand, 8859074 - 8859274
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  8859074 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 8859173  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  8859174 aacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctct 8859273  T
Q  433 g 433  Q
    |    
T  8859274 g 8859274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 235 - 430
Target Start/End: Complemental strand, 4425940 - 4425743
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||||  |||||||||||||||||    
T  4425940 ttattatttaatttatgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgctgaccacacaagtgattctataaatag 4425841  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctct 430  Q
    ||| |||||| ||||||||||  ||| |||||| |||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||    
T  4425840 aacccttgtgttgaagcattactaactttttgtaagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctct 4425743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 235 - 430
Target Start/End: Original strand, 8846085 - 8846282
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||  |||||||||||||||||||||||  |||||||||||||||||    
T  8846085 ttattatttaatttacgaaaaatagagaaacgcggtccaacgtaaggtacgatgtatttaagtgttgtcttgctgaccacacaagtgattctataaatag 8846184  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctct 430  Q
    ||| |||||  ||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |||||    
T  8846185 aacccttgtattgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaactttgttctct 8846282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 28392467 - 28392267
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||||  |||||||||||||||||    
T  28392467 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgctgaccacacaagtgattctataaatag 28392368  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||| | |||||| ||||||||  |||||||    
T  28392367 aacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagctgccgctctttaaaccttcttctctct 28392268  T
Q  433 g 433  Q
    |    
T  28392267 g 28392267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 19919831 - 19919631
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  19919831 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaagatacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 19919732  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  | | ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||  |||||||    
T  19919731 aacccttgtgttgaagcattactacctttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttcttctctct 19919632  T
Q  433 g 433  Q
    |    
T  19919631 g 19919631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 19926060 - 19925860
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  19926060 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaagatacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 19925961  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  | | ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||  |||||||    
T  19925960 aacccttgtgttgaagcattactacctttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttcttctctct 19925861  T
Q  433 g 433  Q
    |    
T  19925860 g 19925860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 238 - 433
Target Start/End: Original strand, 869506 - 869703
Alignment:
Q  238 ttatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatagaac 335  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||| || |||||  ||||||||||||||||||||    
T  869506 ttatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatagaac 869605  T
Q  336 tcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctctg 433  Q
     |||||| |||| |||||  ||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| | | ||||||||    
T  869606 ccttgtgttgaaacattactaaccttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagttctctctg 869703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 235 - 433
Target Start/End: Original strand, 5708219 - 5708419
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||  ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  5708219 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacagtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 5708318  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| |||| |||||  ||||||||||||||| ||||||||||||||||||||||||||| ||||||||  ||||||||||| | | |||||||    
T  5708319 aacccttgtgttgaaacattactaaccttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgctgctctctaaacgtagttctctct 5708418  T
Q  433 g 433  Q
    |    
T  5708419 g 5708419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 235 - 433
Target Start/End: Original strand, 18269955 - 18270155
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  18269955 ttattgtttaacttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 18270054  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| |||| ||| |  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  18270055 aacccttgtgttgaaacatgactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctct 18270154  T
Q  433 g 433  Q
    |    
T  18270155 g 18270155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 235 - 433
Target Start/End: Original strand, 5714854 - 5715055
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||  ||||  |||||||||||||| || |  |||||||||||||||||||||    
T  5714854 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacagtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 5714953  T
Q  333 aactcttgtgctgaagcattatgaaccttttg-tgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctc 431  Q
    ||| |||||| |||| |||||  ||||||||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| | | ||||||    
T  5714954 aacccttgtgttgaaacattactaaccttttgttgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacgtagttctctc 5715053  T
Q  432 tg 433  Q
    ||    
T  5715054 tg 5715055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 235 - 433
Target Start/End: Original strand, 55613590 - 55613790
Alignment:
Q  235 ttattatttaatttacgaaaaata-gagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaata 331  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||  |||||||||||||| || |||||  ||||||||||||||||    
T  55613590 ttattatttaatttacgaaaaataagagaaacgcggttcaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaata 55613689  T
Q  332 gaactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctc 431  Q
    |||| |||||| ||||||||||   || ||||||||||| ||||||||||||||||||||||||||| |  ||||| |||||||||||||||| ||||||    
T  55613690 gaacccttgtgttgaagcattacttactttttgtgagtgcttaacctaattcacaaaagttgtgaaa-ctcagccgccgctctctaaaccttgttctctc 55613788  T
Q  432 tg 433  Q
    ||    
T  55613789 tg 55613790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 235 - 433
Target Start/End: Original strand, 18263094 - 18263294
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||||||||  ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  18263094 ttattgtttaacttacgaaaaatagagaaacgcggtccaccgtaaggtacagtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 18263193  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| |||| ||| |  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  18263194 aacccttgtgttgaaacatgactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctct 18263293  T
Q  433 g 433  Q
    |    
T  18263294 g 18263294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 235 - 433
Target Start/End: Original strand, 26971345 - 26971547
Alignment:
Q  235 ttattatttaatttacgaaaaa-tagagaaa-cgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaat 330  Q
    ||||||||||||||| |||||| |||||||| |||||| |||||||||||||| ||||  |||||||||||||| || |||||  |||||||||||||||    
T  26971345 ttattatttaatttaggaaaaaatagagaaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaat 26971444  T
Q  331 agaactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctct 430  Q
    ||||| |||||| |||| |||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||    
T  26971445 agaacccttgtgttgaaacattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctct 26971544  T
Q  431 ctg 433  Q
    |||    
T  26971545 ctg 26971547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 275 - 424
Target Start/End: Complemental strand, 5667354 - 5667202
Alignment:
Q  275 cgtaaggtacgatgtagctaagtg-ttgtcttgctgaccaca--agtgattctataaatagaactcttgtgctgaagcattatgaaccttttgtgagtgt 371  Q
    ||||||||||| ||||  |||||| ||| |||||||||||||  |||||||||||||||||||| |||||||||||||||||   |  |||||||||||     
T  5667354 cgtaaggtacggtgtacttaagtgcttggcttgctgaccacacaagtgattctataaatagaacccttgtgctgaagcattacatattttttgtgagtgc 5667255  T
Q  372 ttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttg 424  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||||||||||    
T  5667254 ttaaccttattcacaaaagttgtgaaaccctagccgccgctctctaaaccttg 5667202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 433
Target Start/End: Original strand, 26964592 - 26964653
Alignment:
Q  372 ttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctctg 433  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||    
T  26964592 ttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctg 26964653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 312 - 423
Target Start/End: Complemental strand, 47388176 - 47388065
Alignment:
Q  312 cacaagtgattctataaatagaactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgc 411  Q
    |||||||||||  |||||||||||  |||||||||| |||||   || |||  |||||| |||||||||||||||||||  |||||| |||||||| | |    
T  47388176 cacaagtgatttgataaatagaaccattgtgctgaaacattactgacttttgttgagtgcttaacctaattcacaaaaggcgtgaaaccctagccgccac 47388077  T
Q  412 tctctaaacctt 423  Q
    ||||||||||||    
T  47388076 tctctaaacctt 47388065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 5667430 - 5667385
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaag 280  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  5667430 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaag 5667385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 10676905 - 10676851
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgt 289  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||    
T  10676905 ttattatttaatttatgaaaaatagagaaatgcggtccaccgtaaggtacaatgt 10676851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 10890545 - 10890491
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgt 289  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||    
T  10890545 ttattatttaatttatgaaaaatagagaaatgcggtccaccgtaaggtacaatgt 10890491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 35224456 - 35224553
Alignment:
Q  253 aaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtg-ttgtcttgctga--ccacaagtgattctataaatagaactcttgtgctgaa 347  Q
    |||||||||||||||||| |||||||||||||| ||||  |||||| ||| |||  |||   |||||||| ||||||||||||||| |||||||||||    
T  35224456 aaaatagagaaacgcggtccaccgtaaggtacggtgtacttaagtgcttgactttatgagcacacaagtggttctataaatagaacccttgtgctgaa 35224553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 47388294 - 47388244
Alignment:
Q  235 ttattatttaatttacgaaaaatagag-aaacgcggttcaccgtaaggtac 284  Q
    |||||||||||||||| |||||||||| ||||||||| |||||||||||||    
T  47388294 ttattatttaatttacaaaaaatagagaaaacgcggtccaccgtaaggtac 47388244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 8e-68; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 18531839 - 18531638
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||  ||||  |||||||||||||||||||  |||||||||||||||||||||    
T  18531839 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacagtgtatttaagtgttgtcttgctgaccacacaagtgattctataaatag 18531740  T
Q  333 aactcttgtgctgaagcattatgaacc-ttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctc 431  Q
    ||| |||||| |||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||  ||||||    
T  18531739 aacccttgtgttgaagcattacgaacctttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttcttctctc 18531640  T
Q  432 tg 433  Q
    ||    
T  18531639 tg 18531638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 235 - 433
Target Start/End: Original strand, 18252912 - 18253112
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  18252912 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 18253011  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  18253012 aacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctct 18253111  T
Q  433 g 433  Q
    |    
T  18253112 g 18253112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 233 - 433
Target Start/End: Complemental strand, 27130711 - 27130509
Alignment:
Q  233 cattattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaat 330  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||||||||||||||  |||||||||||||||    
T  27130711 cattattatttaatttacgaaaaatagagaaacgcggtctaccgtaaggtacggtgtatttaagtgttgtcttgctgaccacacaagtgattctataaat 27130612  T
Q  331 agaactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctct 430  Q
    ||||| |||||| ||||||||||  ||| |||||| |||| ||||||||||||||||||||||||||| |||||||  |||||||||||||||| |||||    
T  27130611 agaacccttgtgttgaagcattactaactttttgtaagtgcttaacctaattcacaaaagttgtgaaaccctagcctccgctctctaaaccttgttctct 27130512  T
Q  431 ctg 433  Q
    |||    
T  27130511 ctg 27130509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 235 - 430
Target Start/End: Complemental strand, 27309877 - 27309681
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaatag 332  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||  |||||||||||||||| ||  |||||||||||||||||||||    
T  27309877 ttattatttaatttatgaaaaatagagaaacgcggtccaccgtaaggtacgatgtatttaagtgttgtcttgctaaccacacaagtgattctataaatag 27309778  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctct 430  Q
    ||| |||||| ||||||||||  ||| ||||||||||| ||||||||||| ||||||||||||||| |||||||| |||||||||||||||| |||||    
T  27309777 aac-cttgtgttgaagcattactaactttttgtgagtgcttaacctaattaacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctct 27309681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 235 - 430
Target Start/End: Complemental strand, 16358360 - 16358163
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||  |||||||||||||||||||||||  | |||||||||||||||    
T  16358360 ttattatttaatttacgaaaaatagggaaacgcggtccaccgtaaggtacaatgtatttaagtgttgtcttgctgaccacacaaatgattctataaatag 16358261  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctct 430  Q
    ||| |||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| | |||| |||||||||||||| ||| |||||    
T  16358260 aacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccatagctgtcgctctctaaacgttgttctct 16358163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 235 - 422
Target Start/End: Complemental strand, 9076202 - 9076013
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    ||||||||||||||| |||||||||||||||||| | |||||||||||| | ||||  |||||||||||||||||||||||  |  ||||||||||||||    
T  9076202 ttattatttaatttatgaaaaatagagaaacgcgatccaccgtaaggtatgctgtatttaagtgttgtcttgctgaccacacaaacgattctataaatag 9076103  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaacct 422  Q
    ||| |||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  9076102 aacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacct 9076013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 36815843 - 36815748
Alignment:
Q  312 cacaagtgattctataaatagaactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccg 407  Q
    |||||||||||||||||||||||| |||||| |||||||| |   || | ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  36815843 cacaagtgattctataaatagaacccttgtgttgaagcatgacagacttcttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccg 36815748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 36815960 - 36815911
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtac 284  Q
    |||||||||||||||||||||||||||||| ||||| |||| ||||||||    
T  36815960 ttattatttaatttacgaaaaatagagaaatgcggtccaccataaggtac 36815911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 404
Target Start/End: Complemental strand, 27276723 - 27276691
Alignment:
Q  372 ttaacctaattcacaaaagttgtgaaatcctag 404  Q
    ||||||||||||||||||||||||||| |||||    
T  27276723 ttaacctaattcacaaaagttgtgaaaccctag 27276691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 6234 - 6034
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgacca--caagtgattctataaatag 332  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||  |||||||||||||| || |||  |||||||||||||||||||    
T  6234 ttattatttaatttaccaaaaatagagaaacgcggttcaccgtaaggtacggtgtatttaagtgttgtcttgttgtccatacaagtgattctataaatag 6135  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  6134 aacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctct 6035  T
Q  433 g 433  Q
    |    
T  6034 g 6034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 13250 - 13050
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  13250 ttattatttaatttaccaaaaatagagaaacgcggttcaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 13151  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  ||| ||||||||||| |||||||||||||||| |||||||||| |||||||| |||||||||||||||| |||||||    
T  13150 aacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaacagttgtgaaaccctagccgccgctctctaaaccttgttctctct 13051  T
Q  433 g 433  Q
    |    
T  13050 g 13050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 5521 - 5321
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  5521 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 5422  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  5421 aacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctct 5322  T
Q  433 g 433  Q
    |    
T  5321 g 5321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 17690765 - 17690565
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  17690765 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 17690666  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  17690665 aacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctct 17690566  T
Q  433 g 433  Q
    |    
T  17690565 g 17690565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 27380552 - 27380352
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  27380552 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaagtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 27380453  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| |||| |||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  27380452 aacccttgtgttgaaacattattaacctttggtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctct 27380353  T
Q  433 g 433  Q
    |    
T  27380352 g 27380352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 27470935 - 27470735
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  27470935 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaagtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 27470836  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| |||| |||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  27470835 aacccttgtgttgaaacattattaacctttggtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctct 27470736  T
Q  433 g 433  Q
    |    
T  27470735 g 27470735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 235 - 433
Target Start/End: Original strand, 29309772 - 29309972
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  29309772 ttattatttaatttacgaaaaatagagaaatgcggttcaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 29309871  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  ||| ||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| | |||||    
T  29309872 aacccttgtgttgaagcattactaacttttggtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttatctct 29309971  T
Q  433 g 433  Q
    |    
T  29309972 g 29309972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 235 - 433
Target Start/End: Original strand, 29316731 - 29316931
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  29316731 ttattatttaatttacgaaaaatagagaaatgcgattcaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 29316830  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  ||| ||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| | |||||    
T  29316831 aacccttgtgttgaagcattactaacttttggtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttatctct 29316930  T
Q  433 g 433  Q
    |    
T  29316931 g 29316931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 252 - 433
Target Start/End: Original strand, 27297558 - 27297741
Alignment:
Q  252 aaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatagaactcttgtgctgaagc 349  Q
    |||||||||||||||||||||||||||||||||| ||||  |||||||||||||| || |||||  |||||||||||||||||||| |||||| ||||||    
T  27297558 aaaaatagagaaacgcggttcaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagc 27297657  T
Q  350 attatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctctg 433  Q
    ||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||||    
T  27297658 attactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaactttgttctctctg 27297741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 235 - 423
Target Start/End: Original strand, 11652580 - 11652770
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||  |||||||||||||||||||||    
T  11652580 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgctgaccacacaagtgattctataaatag 11652679  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaacctt 423  Q
    ||| |||||| ||||||||||  ||  |||||||| || | ||||||||||||||||||||||||| |||||  | |||||||||||||||    
T  11652680 aacccttgtgttgaagcattactaattttttgtgaatgctgaacctaattcacaaaagttgtgaaaccctagatgccgctctctaaacctt 11652770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 235 - 430
Target Start/End: Complemental strand, 17683782 - 17683585
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaatag 332  Q
    ||||||||||||||||||||| ||||||||||| || |||||||||||||||||||  |||||||||||||||||||  |||||||||||||||||||||    
T  17683782 ttattatttaatttacgaaaa-tagagaaacgcagtccaccgtaaggtacgatgtatttaagtgttgtcttgctgaccacacaagtgattctataaatag 17683684  T
Q  333 aactcttgtgctgaagcattatgaacc-ttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctct 430  Q
    ||| |||||| ||||||||||  |||| ||||||||||| ||||| ||||||||||||||||||||| ||||| |  |||||||||||| ||| |||||    
T  17683683 aacccttgtgttgaagcattactaacctttttgtgagtgcttaacttaattcacaaaagttgtgaaaccctagtcaccgctctctaaacattgttctct 17683585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 235 - 430
Target Start/End: Complemental strand, 25536490 - 25536292
Alignment:
Q  235 ttattatttaatttacgaaaaa-tagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaata 331  Q
    |||||||||||||||||||||| |||||||||||| |  ||||||||||||  ||||  ||||||||||||| |||| ||||  ||||||||||||||||    
T  25536490 ttattatttaatttacgaaaaaatagagaaacgcgatcgaccgtaaggtacagtgtatttaagtgttgtctttctgatcacacaagtgattctataaata 25536391  T
Q  332 gaactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctct 430  Q
    |||| |||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| || ||||| |||||||||||||||| |||||    
T  25536390 gaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacccaagccgccgctctctaaaccttgttctct 25536292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 16558797 - 16558717
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca 315  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||| |||| | ||  |||||||||||||||||||||||    
T  16558797 ttattatttaatttatgaaaaatagagaaacgcggtccaccgtaagatacggtatatttaagtgttgtcttgctgaccaca 16558717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 28755579 - 28755534
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaag 280  Q
    |||||||||||||||||||||||||||||| | |||| ||||||||    
T  28755579 ttattatttaatttacgaaaaatagagaaatgtggtttaccgtaag 28755534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 16393743 - 16393660
Alignment:
Q  272 caccgtaaggtacgatgtagctaagtg-ttgtcttgctgac--cacaagtgattctataaatagaactcttgtgctgaagcatt 352  Q
    |||||||||||||| ||||  |||||| ||| |||| ||||  |||||||| ||||||||||||||| ||||||||||| ||||    
T  16393743 caccgtaaggtacggtgtatttaagtgattgacttgatgacgacacaagtggttctataaatagaacacttgtgctgaaacatt 16393660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 351
Target Start/End: Original strand, 18336553 - 18336592
Alignment:
Q  312 cacaagtgattctataaatagaactcttgtgctgaagcat 351  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  18336553 cacaagtggttctataaatagaactcttgtgctaaagcat 18336592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 10537 - 10337
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  10537 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 10438  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| |||| ||| |  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  10437 aacccttgtgttgaaacatgactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctct 10338  T
Q  433 g 433  Q
    |    
T  10337 g 10337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 1646 - 1444
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaa--t 330  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||| || |||||  ||||||||||||||  |    
T  1646 ttattgtttaacttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaaaat 1547  T
Q  331 agaactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctct 430  Q
    ||||| |||||| |||| ||| |  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||    
T  1546 agaacccttgtgttgaaacatgactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctct 1447  T
Q  431 ctg 433  Q
    |||    
T  1446 ctg 1444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 8e-62; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 235 - 432
Target Start/End: Complemental strand, 11535387 - 11535188
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||| || |||||  |||||||||||||||||    
T  11535387 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaatag 11535288  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  ||| |||||| |||| ||||||||||||||||||||||||||| |||||||  |||||||||||||||| |||||||    
T  11535287 aacccttgtgttgaagcattactaactttttgttagtgcttaacctaattcacaaaagttgtgaaaccctagccaccgctctctaaaccttgttctctct 11535188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 235 - 432
Target Start/End: Complemental strand, 11542305 - 11542106
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||| ||||||||| || |||||  |||||||||||||||||    
T  11542305 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagcgttgtcttgttgtccacacaagtgattctataaatag 11542206  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| || ||||||||||||| |||||||    
T  11542205 aacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgttctctaaaccttgttctctct 11542106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 235 - 433
Target Start/End: Original strand, 29328666 - 29328870
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaa--- 329  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||| || |||||  ||||||||||||||       
T  29328666 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaaaaa 29328765  T
Q  330 -tagaactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtct 428  Q
     |||||| |||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||    
T  29328766 atagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttct 29328865  T
Q  429 ctctg 433  Q
    |||||    
T  29328866 ctctg 29328870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 235 - 432
Target Start/End: Original strand, 12739424 - 12739623
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    ||||||||||||||||||||||||||||||||||||  | |||||||||| |||||  |||||||||||||||||||||||  |||||||||||||||||    
T  12739424 ttattatttaatttacgaaaaatagagaaacgcggtctatcgtaaggtacaatgtatttaagtgttgtcttgctgaccacacaagtgattctataaatag 12739523  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    |||  ||||  || |||||||  ||| ||||||||||| ||||||||||||||||||||||||||| | |||||| |||||||||||||||| |||||||    
T  12739524 aacctttgttttgtagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccgtagccgccgctctctaaaccttgttctctct 12739623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 235 - 433
Target Start/End: Original strand, 18561913 - 18562115
Alignment:
Q  235 ttattatttaatttacgaaaaa--tagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaat 330  Q
    ||||||||||||||||||||||  |||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||  ||||||| |||||||||||    
T  18561913 ttattatttaatttacgaaaaaaatagagaaacgcggtccaccgtaaagtacggtgtatctaagtgttgtcttgctgactacacaagtaattctataaat 18562012  T
Q  331 agaactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctct 430  Q
    ||||| |||||| ||||| ||||  ||| ||||||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||||||  |||||    
T  18562013 agaacccttgtgttgaagtattactaactttttgtgagtgctaaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttcttctct 18562112  T
Q  431 ctg 433  Q
    |||    
T  18562113 ctg 18562115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 235 - 398
Target Start/End: Complemental strand, 24850884 - 24850719
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaatag 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||||||  |||||||||||||||||||||    
T  24850884 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacggtgtatttaagtgttgttttgctgaccacacaagtgattctataaatag 24850785  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaa 398  Q
    ||| ||| || |||||||||| |||| ||||| ||||| |||||||||||||||||||||||||||    
T  24850784 aacccttatgttgaagcattacgaactttttgggagtgcttaacctaattcacaaaagttgtgaaa 24850719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 235 - 432
Target Start/End: Original strand, 12751741 - 12751940
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||||||||| ||||  |||||||||||||||||||||||  ||||||||||||||| |    
T  12751741 ttattatttaatttacgaaaaatagagaaacgcagtctaccgtaaggtacggtgtatttaagtgttgtcttgctgaccacacaagtgattctataaatgg 12751840  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    |||  ||||| ||||||||||  ||| ||||||||||| ||||||| ||| ||||||||||||||| | |||||| |||||||||||||||| |||||||    
T  12751841 aaccattgtgttgaagcattactaactttttgtgagtgcttaacctcatttacaaaagttgtgaaaccgtagccgccgctctctaaaccttgttctctct 12751940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 11557392 - 11557198
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaatag 332  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||| ||||  |||||||||||||||||||  |||||||||||||||||||||    
T  11557392 ttattatttaatttacgaaaaatagagaaacgcagtccaccgtaaggtacgttgtatttaagtgttgtcttgctgaccacacaagtgattctataaatag 11557293  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| ||| || ||||||| |       ||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  11557292 aacccttatgttgaagcact------ttttggtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctct 11557199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 237 - 420
Target Start/End: Original strand, 15153352 - 15153536
Alignment:
Q  237 attatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaatagaa 334  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||| |||   |||||||||||||||||||  |||||||||||||||||||||||    
T  15153352 attatttaatttatgaaaaatagagaaacgcggtccaccgtaaggtacggtgtgtttaagtgttgtcttgctgaccacacaagtgattctataaatagaa 15153451  T
Q  335 ctcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaac 420  Q
    | |||||| ||||||||||  ||| ||||||||||| | ||||| ||||||||||||||||||| |||||||| ||||||||||||    
T  15153452 cccttgtgttgaagcattacaaactttttgtgagtgctaaacctcattcacaaaagttgtgaaa-cctagccgccgctctctaaac 15153536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 360 - 433
Target Start/End: Complemental strand, 2653186 - 2653113
Alignment:
Q  360 ttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctctg 433  Q
    |||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||    
T  2653186 ttttatgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctg 2653113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 357 - 433
Target Start/End: Original strand, 9978834 - 9978910
Alignment:
Q  357 accttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctctg 433  Q
    |||||||||||||| |||||||||||| |||||||||||||| |||||||| |||||||||||||||  ||||||||    
T  9978834 accttttgtgagtgcttaacctaattcgcaaaagttgtgaaaccctagccgccgctctctaaaccttcttctctctg 9978910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 272 - 406
Target Start/End: Original strand, 13393080 - 13393217
Alignment:
Q  272 caccgtaaggtacgatgtagctaagtg-ttgtcttgctgaccaca--agtgattctataaatagaactcttgtgctgaagcattatgaaccttttgtgag 368  Q
    |||||||||||||||||||  |||||| |||  ||||||||||||  |||||||||||||||||||| ||||||||||| |||||   |  ||||||||     
T  13393080 caccgtaaggtacgatgtacttaagtgcttggtttgctgaccacacaagtgattctataaatagaacccttgtgctgaaacattacatagtttttgtgaa 13393179  T
Q  369 tgtttaacctaattcacaaaagttgtgaaatcctagcc 406  Q
       ||||||||||| ||||||||||||||| |||||||    
T  13393180 cacttaacctaatttacaaaagttgtgaaaccctagcc 13393217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 13393006 - 13393060
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgt 289  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  13393006 ttattatttaatttacgaaaaatagagaaatgcggtccaccgtaaggtacaatgt 13393060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 9978782 - 9978832
Alignment:
Q  293 taagtgttgtcttgctgaccaca--agtgattctataaatagaactcttgt 341  Q
    |||||||||||||||||||||||  | |||||||||||||||||| |||||    
T  9978782 taagtgttgtcttgctgaccacacgattgattctataaatagaacccttgt 9978832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1199 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold1199
Description:

Target: scaffold1199; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 237 - 433
Target Start/End: Original strand, 4 - 207
Alignment:
Q  237 attatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaatagaa 334  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||  ||||||| |||||||||||||||    
T  4 attatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgctgaccacacaagttattctataaatagaa 103  T
Q  335 ctcttgtgctgaagcattatgaacctttt-----gtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctc 429  Q
    | |||||| ||||||||||||||| ||||     ||||||| ||||||||||||||||||||||||||| | |||||| |||| ||||||||||| ||||    
T  104 cccttgtgttgaagcattatgaactttttgaaaagtgagtgcttaacctaattcacaaaagttgtgaaaccatagccgccgctatctaaaccttgttctc 203  T
Q  430 tctg 433  Q
    ||||    
T  204 tctg 207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 235 - 432
Target Start/End: Complemental strand, 19706497 - 19706298
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||| | ||  |||||||||||||| ||||||||  |||||||||||||||||    
T  19706497 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaagatacggtatatttaagtgttgtcttgttgaccacacaagtgattctataaatag 19706398  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| ||| || |||||||| |  ||| ||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||  |||||||    
T  19706397 aacccttatgttgaagcataactaacttttagtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttcttctctct 19706298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 19713823 - 19713625
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccacaagtgattctataaatagaa 334  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||  | ||  |||||||||||||||    |||||||||||||||||||||||    
T  19713823 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacagtatatttaagtgttgtcttgcaccacacaagtgattctataaatagaa 19713724  T
Q  335 ctcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctctg 433  Q
    | |||||| |||||||| |  ||| ||| ||||||| ||||||||||||||||||||||||||| |||||| | |||||||||||||||  ||||||||    
T  19713723 cccttgtgttgaagcataactaacttttagtgagtgcttaacctaattcacaaaagttgtgaaaccctagctgccgctctctaaacctttttctctctg 19713625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 24694783 - 24694585
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||| || |  |||||||||||| ||||||||    
T  24694783 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattccataaatag 24694684  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  |||  ||| || ||| ||||||||||||||||||||||||||| |||||||| || ||||||||||| | |||||||    
T  24694683 aacccttgtgttgaagcattactaac--tttttgggtgcttaacctaattcacaaaagttgtgaaaccctagccgccgttctctaaacctcgttctctct 24694586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 24701547 - 24701349
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||| || |  |||||||||||| ||||||||    
T  24701547 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattccataaatag 24701448  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctct 432  Q
    ||| |||||| ||||||||||  |||  ||| || ||| ||||||||||||||||||||||||||| |||||||| || ||||||||||| | |||||||    
T  24701447 aacccttgtgttgaagcattactaac--tttttgggtgcttaacctaattcacaaaagttgtgaaaccctagccgccgttctctaaacctcgttctctct 24701350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 235 - 424
Target Start/End: Complemental strand, 18565791 - 18565594
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaatag 332  Q
    ||||||||||||||||||||| |||||||||||||| ||| |||||| ||| ||||  |||||||||||||||||||  |||||||||||||||||||||    
T  18565791 ttattatttaatttacgaaaattagagaaacgcggtccactgtaaggcacggtgtatttaagtgttgtcttgctgaccacacaagtgattctataaatag 18565692  T
Q  333 aac-----tcttgtgctgaagcattatgaac-cttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttg 424  Q
    |||     | ||||| ||||||||||  |||  ||||||||||| ||||||||||||||||||||||||||| |||||||| || |||||||||||||    
T  18565691 aacccttgtgttgtgttgaagcattacaaacttttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccggtctctaaaccttg 18565594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 235 - 420
Target Start/End: Complemental strand, 21329569 - 21329380
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaa--t 330  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||| || |||||  ||||||||||||||  |    
T  21329569 ttattatttaatttacgaaaaatagagaaacgcggtccaccgtaaggtacggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaaaat 21329470  T
Q  331 agaactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaac 420  Q
    ||||| |||||| |||| |||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  21329469 agaacccttgtgttgaaacattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaac 21329380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 235 - 430
Target Start/End: Complemental strand, 22791158 - 22790961
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaatag 332  Q
    ||||||||||||| ||||||||||||||||||| || ||| |||||||||| ||||  |||||||||||||||||||||||  |||||||||||||||||    
T  22791158 ttattatttaattcacgaaaaatagagaaacgcagtccactgtaaggtacggtgtatttaagtgttgtcttgctgaccacacaagtgattctataaatag 22791059  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctct 430  Q
    ||| |||||  || |||||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||| || ||| |||||    
T  22791058 aacccttgttttgtagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctatactttgttctct 22790961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 371 - 431
Target Start/End: Original strand, 41664786 - 41664846
Alignment:
Q  371 tttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctc 431  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||    
T  41664786 tttaacctaattcacaaaagttgtgaaaccctagccgtcgttctctaaaccttgttctctc 41664846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 285
Target Start/End: Original strand, 18620681 - 18620730
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacg 285  Q
    |||||||||||||||| ||||||||||||||| ||| |||||||| |||||    
T  18620681 ttattatttaatttac-aaaaatagagaaacgtggtccaccgtaatgtacg 18620730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 235 - 433
Target Start/End: Original strand, 7989 - 8190
Alignment:
Q  235 ttattatttaatttacgaaaaa-tagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgaccaca--agtgattctataaata 331  Q
    ||||| ||||| |||||||||| |||||||||||||| |||||||||||| | ||||  |||||||||||||| || |||||  ||||||||||||||||    
T  7989 ttattgtttaacttacgaaaaaatagagaaacgcggtccaccgtaaggtatggtgtatttaagtgttgtcttgttgtccacacaagtgattctataaata 8088  T
Q  332 gaactcttgtgctgaagcattatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctc 431  Q
    |||| |||||| |||| |||||  ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||    
T  8089 gaacccttgtgttgaaacattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaactttgttctctc 8188  T
Q  432 tg 433  Q
    ||    
T  8189 tg 8190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 235 - 430
Target Start/End: Complemental strand, 229716 - 229515
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaatag 332  Q
    |||||||||||||||||||||||||||||| | ||| |||||||||||||| ||||  |||||||| ||||||||||  |||||||||||||||||||||    
T  229716 ttattatttaatttacgaaaaatagagaaatgtggtccaccgtaaggtacggtgtatttaagtgttttcttgctgaccacacaagtgattctataaatag 229617  T
Q  333 aactcttgtgctgaagcattatgaac----cttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtct 428  Q
    ||| ||| || |||||||| | ||||     |||| | |||| |||||||||||||||||||| |||||| |||||||| |||||||||||||||| |||    
T  229616 aacccttctgttgaagcatgacgaacttttttttttttagtgcttaacctaattcacaaaagtggtgaaaccctagccgccgctctctaaaccttgttct 229517  T
Q  429 ct 430  Q
    ||    
T  229516 ct 229515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 235 - 433
Target Start/End: Original strand, 19194 - 19395
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaatag 332  Q
    |||||||||||||||||||| ||| ||||||||||| ||| | |||||||| ||||  |||||||||||||| || |  |||||||||||||||||||||    
T  19194 ttattatttaatttacgaaatataaagaaacgcggtccactggaaggtacggtgtatttaagtgttgtcttgttgcccacacaagtgattctataaatag 19293  T
Q  333 aactcttgtgctgaagcattatgaaccttttgtg-agtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggtctctc 431  Q
    ||| |||||| |||| |||||  ||| ||||||| |||| ||||||||||||||||||||||||||| |||||||| | |||||||||| | | ||||||    
T  19294 aacccttgtgttgaaacattactaactttttgtgaagtgcttaacctaattcacaaaagttgtgaaaccctagccgccactctctaaacgtagttctctc 19393  T
Q  432 tg 433  Q
    ||    
T  19394 tg 19395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 235 - 430
Target Start/End: Original strand, 6404 - 6607
Alignment:
Q  235 ttattatttaatttacgaaaaatagagaaacgcggttcaccgtaaggtacgatgtagctaagtgttgtcttgctgac--cacaagtgattctataaatag 332  Q
    ||||||||||||||||||||||| ||||||| |||| |||||||| ||| | ||||  |||||||||||||||||||  |||||||||||||||||||||    
T  6404 ttattatttaatttacgaaaaatggagaaactcggtccaccgtaaagtatggtgtatttaagtgttgtcttgctgaccacacaagtgattctataaatag 6503  T
Q  333 aactcttgtgctgaagcattatgaac------cttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcgctctctaaaccttggt 426  Q
    ||| |||||| |||||||| | ||||       |||| | |||| |||||||||||||||||||| |||||| |||||||| |||||||||||||||| |    
T  6504 aacccttgtgttgaagcatgacgaacttttttttttttttagtgcttaacctaattcacaaaagtggtgaaaccctagccgccgctctctaaaccttgtt 6603  T
Q  427 ctct 430  Q
    ||||    
T  6604 ctct 6607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 102 - 230
Target Start/End: Complemental strand, 2986 - 2856
Alignment:
Q  102 ttttgtgaaacctacttttcgaattattccaccttttacctaagatccattataacctaaacaacgtatttatactg-nnnnnnngaattgaaat-aaaa 199  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||         |||| |||| ||||    
T  2986 ttttgtgaaacctacttttcgaattattccaccttttacctaagctccattataacctaaacaacgcatttatagtgtttttttttaattaaaataaaaa 2887  T
Q  200 agatatatttatttgtgcatgtttttaaaga 230  Q
    | |||||||||||||||||||||||||||||    
T  2886 atatatatttatttgtgcatgtttttaaaga 2856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 433
Target Start/End: Complemental strand, 107494 - 107372
Alignment:
Q  312 cacaagtgattctataaatagaactcttgtgctgaagcattatgaaccttttgt-gagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcg 410  Q
    |||||||| |||| |||||||||| |||||||||||||||||  ||  |||||| ||    ||||  ||||||||||||||||||||| |||||||| |     
T  107494 cacaagtggttctgtaaatagaacccttgtgctgaagcattactaagtttttgttgaacacttaagataattcacaaaagttgtgaaaccctagccgcca 107395  T
Q  411 ctctctaaaccttggtctctctg 433  Q
    |||| |||| |||| ||||||||    
T  107394 ctctttaaatcttgttctctctg 107372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 433
Target Start/End: Original strand, 10 - 128
Alignment:
Q  312 cacaagtgattctataaatagaactcttgtgctgaagcat-tatgaaccttttgtgagtgtttaacctaattcacaaaagttgtgaaatcctagccgtcg 410  Q
    |||||||| |||||||||||||||||||||||| |||||| |  ||   |||||  |||| || |||||||||| |||||| ||||||   || ||| ||    
T  10 cacaagtggttctataaatagaactcttgtgctaaagcatgtccga---ttttg-aagtgctttacctaattcataaaagtggtgaaacagtatccgccg 105  T
Q  411 ctctctaaaccttggtctctctg 433  Q
    |||||||||||||| ||||||||    
T  106 ctctctaaaccttgttctctctg 128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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