View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_high_30 (Length: 413)
Name: NF1145_high_30
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 51728505 - 51728383
Alignment:
| Q |
17 |
tggaccctacactagtcaagactataagaagaaggattggatacatagcttataatcattatagtagccactgcataattaatactgaaattataacaaa |
116 |
Q |
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| T |
51728505 |
tggaccctatattagtcaagactataagaagaaggattggatacatagcttataatcattatagtagccactgcataattaatagtaaaattataacaaa |
51728406 |
T |
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| Q |
117 |
aatataagtatgttctcctttca |
139 |
Q |
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| T |
51728405 |
aatataagtatgttctcctttca |
51728383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 51728389 - 51728327
Alignment:
| Q |
189 |
cctttcatacactcaagtcatgaataggtttatagccatgttaatcaaaaagagattttggtg |
251 |
Q |
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| T |
51728389 |
cctttcatacactcaagtcatgaataggtttatagccatgctaatcaaaaagagattttggtg |
51728327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 256 - 307
Target Start/End: Complemental strand, 51728298 - 51728247
Alignment:
| Q |
256 |
tcattaaatgtattgaaatagcaaaattcatgcataatatcttttttgtgag |
307 |
Q |
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| T |
51728298 |
tcattaaatgtattgaaatagcaaaattcatgcctaatatcttttttgtgag |
51728247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 311 - 407
Target Start/End: Complemental strand, 8447129 - 8447033
Alignment:
| Q |
311 |
aatagagagaaagggaacaaacaactgtacgatacaaatccattggcaaaggcttcaatagatcaatggttagaagctgaaggacaaagcttcaatc |
407 |
Q |
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| T |
8447129 |
aatatagagaaagggaacaaacaactgtatggtacaaatccattggcaaaggcttcaatagatcaatggttagaagctgaaggacaaagcttcaatc |
8447033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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