View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_high_31 (Length: 410)
Name: NF1145_high_31
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 382
Target Start/End: Complemental strand, 3651268 - 3650898
Alignment:
| Q |
11 |
taatactttatataattttcaccgttgtggttcaagaaatatacgaataatggtgatctcaatggtaacaattcaaacagcgcttcaagaggcgactggt |
110 |
Q |
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| T |
3651268 |
taatactttatataattttcaccgttgtggttcaagaaatatacgaataatggtgatctcaatggtaacaattcaaacagcgcttcaagaggcgactggt |
3651169 |
T |
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| Q |
111 |
ggcaaggtaagaacgataatttattttggttagagagttttcataattttagaaagaaagaaaaaactagattactctttttaatattttattaaagcta |
210 |
Q |
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| T |
3651168 |
ggcaaggtaagaacgataatttattttggttagagagttttcataattttagaaagaaagaaaaaactagattactctttttcatattttattaaagcta |
3651069 |
T |
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| Q |
211 |
tattatttcggatttgccaggttccgtttactactaaatcactgcggctatggtattaaaaagtagcataagatgaagatcatatgagtaagtaccgttc |
310 |
Q |
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| T |
3651068 |
tattatttcggatttgccaggttccctttactactaagtcactgcggctatggtattaaaaagtagcataagatgaagatcatatgagtaagtaccgttc |
3650969 |
T |
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| Q |
311 |
aatccactagttaggtccnnnnnnnngtcacagatcatagcaggtgtaattaattaaaccgttaaagtagtt |
382 |
Q |
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| T |
3650968 |
aatccactagttaggtcc-tttttttgtcacagatcatagcaggtataattagttaaaccgttaaagtagtt |
3650898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 3512510 - 3512642
Alignment:
| Q |
6 |
gtagataatactttatataattttcaccgttgtggttcaagaaatatacgaataatggtgatctcaatggtaacaattcaaacagcgcttcaagaggcga |
105 |
Q |
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| T |
3512510 |
gtagctaatactttatatgattttcacctttgtagtttaagaaagatacggataatgctgatctcaattgtaacaatcctaacagtgcttcaaggggaga |
3512609 |
T |
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| Q |
106 |
ctggtggcaaggtaagaacgataatttattttg |
138 |
Q |
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| T |
3512610 |
ctggtggctaggtaggaaccataatttattttg |
3512642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 34851703 - 34851782
Alignment:
| Q |
40 |
gttcaagaaatatacgaataatggtgatctcaatggtaacaattcaaacagcgcttcaagaggcgactggtggcaaggta |
119 |
Q |
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| T |
34851703 |
gttcaagaaagataagaatcatggtgatcacaatggtaacaattccagcagtgcttcaagaggggactggtgggaaggta |
34851782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 3512737 - 3512797
Alignment:
| Q |
197 |
ttttattaaagctatattattt---cggatttgccaggttccgtttactactaaatcactg |
254 |
Q |
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| T |
3512737 |
ttttattacagctatattatttattcggatttgccaggttccctttattactaaatcactg |
3512797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 3204052 - 3203972
Alignment:
| Q |
21 |
tataattttcaccgttgtggttcaagaaatatacgaataatggtgatctcaatggtaacaattcaaacagcgcttcaagagg |
102 |
Q |
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| T |
3204052 |
tataattttcacctttgtagttcaagaaagatacggataacgctga-cccaattgtaacaatccaaacagtgcttcaagagg |
3203972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 3500328 - 3500383
Alignment:
| Q |
6 |
gtagataatactttatataattttcaccgttgtggttcaagaaatatacgaataat |
61 |
Q |
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|||| ||||||||| ||||| ||||||| |||||||||||| || ||||||||||| |
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| T |
3500328 |
gtagctaatactttgtataactttcacctttgtggttcaagtaagatacgaataat |
3500383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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