View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_high_34 (Length: 389)
Name: NF1145_high_34
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 4393540 - 4393918
Alignment:
| Q |
1 |
cagaacaagaatcagaaccagaaccagaatcagaatcaagatcaaccaccacaacaaaaccctaattcactttctcaaatttctgctactgtaccctcat |
100 |
Q |
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| T |
4393540 |
cagaacaagaatcagaaccagaaccagaatcagaatcaagatcaaccaccacaacaaaaccctaattcactttctcaaatttctgctactgtaccctcat |
4393639 |
T |
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| Q |
101 |
cttcttcatcttcctctgagaaatctccaccaaaagaattaatacctgccaaagtattttcccttggtttccctaacatcaatgatgttgtgcctaattc |
200 |
Q |
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| T |
4393640 |
cttcttcatcttcctctgagaaatctccaccaaaagaattaatacctgccaaagtattttcccttggtttccctaacatcaatgatgttgtgcctaattc |
4393739 |
T |
|
| Q |
201 |
tccaactgcttctgtgaatcaaaaccaaacatattttcagactcaaaatgttactacccttcttccaccaccacaagtaactgcaccaactaccgagact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4393740 |
tccaactgcttctgtgaatcaaaaccaaacatattttcagactcaaaatgttactacccttcttccaccaccacaagtaactgcaccaactactgagact |
4393839 |
T |
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| Q |
301 |
ttcttcttcccggtgcaacatcatggacaaggaatagtgcttcctaacaatgttacatcacaagggttttgcttctctg |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4393840 |
ttcttcttcccggtgcaacatcatggacaaggaatagtgcttcctaataatgttacatcacaagggttttgcttctctg |
4393918 |
T |
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