View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_high_35 (Length: 389)
Name: NF1145_high_35
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 30 - 375
Target Start/End: Complemental strand, 50464096 - 50463748
Alignment:
| Q |
30 |
gttgatgcgtgcattgaataacattgaattttactaacctacaaattaaattcacacatgaaagcacctaccagaccccatttccttgtcatattctttt |
129 |
Q |
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| T |
50464096 |
gttgatgcgtgcattgaataacattgaattttactaacctacaaattaaattcacacatgaaagcacctaccagaccccatttccttgtcatattctttt |
50463997 |
T |
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| Q |
130 |
gcttcatatcacaatcctgtgctttaaataactcatttctcatcaaatttattacaaacacgaaaactctcctaacacaa---caactcatagaacccac |
226 |
Q |
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| T |
50463996 |
gcttcatatcacaatcctgtgctttaaataactcatttctcatcaaatttattacaaacacgaatactctcctaacacaacaacaactcatagaacccac |
50463897 |
T |
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| Q |
227 |
cctctcttcacaaacaatatgggaaagaaaaatttgaaactaccttctcttttcaaaaccaaagaaatttcacaaagaaaacaacatccatggcaattct |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50463896 |
cctctcttcacaaacaatatgggaaagaaaaatttgaaactaccttctcttttcaaaaccaaagaaatttcacaaagaaaacaacatccatggcaattct |
50463797 |
T |
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| Q |
327 |
taccctcttgtgcccatccaaaaactctttcttttcgagttggtgctgc |
375 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50463796 |
taccctcttgtggccatccaaaaactctttcttttcgagttggtgctgc |
50463748 |
T |
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