View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1145_high_45 (Length: 369)
Name: NF1145_high_45
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_45 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 102 - 362
Target Start/End: Original strand, 54729359 - 54729625
Alignment:
| Q |
102 |
tcaaggaatgttggagcttatacaagattaccaatcaagcaacagccttaaacctccttagtagcatcaaaattccaacaatt------gcaatatacat |
195 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
54729359 |
tcaaggaatgttagagcttatacaagattaccaatcaagcaacagccgtaaacctccttagtagcatcaaaattccaacaattaatattgcaatatacat |
54729458 |
T |
|
| Q |
196 |
aaaatgtatcaaaatattacttccaaatgcaactaatccattaataaagataaaaagggtaaaacaagatttaccctcaaacgatcagagagaacagaag |
295 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
54729459 |
aaaatgtatcaaaatactacttccaaatgcaactaatccattaataaagataaaaagggtaaaagaagatttaccctcaaacgatcagaaagaacagaag |
54729558 |
T |
|
| Q |
296 |
gagtaacgagcttatcataagtagcctgatcaaacaacaccatattatttaccttatccctttgctt |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
54729559 |
gagtaacgagcttatcataagtagcctgatcaaacaacaccatattatttaccttctccttttgctt |
54729625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 102 - 362
Target Start/End: Original strand, 5303750 - 5304016
Alignment:
| Q |
102 |
tcaaggaatgttggagcttatacaagattaccaatcaagcaacagccttaaacctccttagtagcatcaaaattccaacaatt------gcaatatacat |
195 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5303750 |
tcaaggaatgttagagcttatacaagattaccaatcaagaaacagccgtaaacctccttagtagcatcaaaattccaacaattaatattgcaatatacat |
5303849 |
T |
|
| Q |
196 |
aaaatgtatcaaaatattacttccaaatgcaactaatccattaataaagataaaaagggtaaaacaagatttaccctcaaacgatcagagagaacagaag |
295 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5303850 |
aaaatgtatcaaaatactacttccaaatgcaactaatccattaataaagataaaaagggtaaaagtagatttaccctcaaacgatcagagagaacagaag |
5303949 |
T |
|
| Q |
296 |
gagtaacgagcttatcataagtagcctgatcaaacaacaccatattatttaccttatccctttgctt |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
5303950 |
gagtaacgagcttatcataagtagcctgatcaaacaacaccatattatttaccttctccttttgctt |
5304016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 26589878 - 26589925
Alignment:
| Q |
261 |
aagatttaccctcaaacgatcagagagaacagaaggagtaacgagctt |
308 |
Q |
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|||| |||||||||||||||||||||| ||||||||||| | |||||| |
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| T |
26589878 |
aagaattaccctcaaacgatcagagaggacagaaggagtgatgagctt |
26589925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 299
Target Start/End: Original strand, 292128 - 292166
Alignment:
| Q |
261 |
aagatttaccctcaaacgatcagagagaacagaaggagt |
299 |
Q |
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|||| |||||||||||||||||||||| ||||||||||| |
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|
| T |
292128 |
aagaattaccctcaaacgatcagagaggacagaaggagt |
292166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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