View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_high_52 (Length: 348)
Name: NF1145_high_52
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 25044177 - 25043822
Alignment:
| Q |
1 |
ctaattgaagactccatgaatacacttattttatggattatggaaatgtataattttccttatgtattcagcaaaaaacaaaaaacaa-------tttta |
93 |
Q |
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| T |
25044177 |
ctaattgaagactccatgaatacacttattttatggattatggaaatgtataattttccttatgtattcagcaaaaaccaaaaaccaaaaaccaatttta |
25044078 |
T |
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| Q |
94 |
agttttatgaattttgttctgtcannnnnnnnnnnatatttt---------atattgaatttgattcaaatctttatatacactatcctcgttaaagcat |
184 |
Q |
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|||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25044077 |
agttttatgaattttgttctgtcatttttttttttattttttttatatttcatattgaatttgattcaaatctttatatacactatcctcgttaaagcat |
25043978 |
T |
|
| Q |
185 |
gtgactttgtgagttcctttatataaccatgcaccataatcacataatctttatataaccattagaccccctt--------tggttccagcgacaaaaat |
276 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
25043977 |
acgactttgtgagttcctttatataaccatgcagcataatcacataatctttatataaccattagacccccttaaagctactggttccagcgacacaaat |
25043878 |
T |
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| Q |
277 |
cactgctcctaaccatatcaataagttcttttcattgttgtgtagttagtctatat |
332 |
Q |
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| T |
25043877 |
cactgctcctaaacatatcaataagttcttttcattgatgtgtagttagtctatat |
25043822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 28649647 - 28649464
Alignment:
| Q |
9 |
agactccatgaatacacttattttatggattatggaaatgtataattttccttatgtattcagcaaaaaacaaaaaacaattttaagttttatgaatttt |
108 |
Q |
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||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| ||||||||||||| |
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| T |
28649647 |
agactccatgaattcgcttatagtatggattatggaaatgtataattttccttatgaatttagc---------aaaacaattttaaattttatgaatttt |
28649557 |
T |
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| Q |
109 |
gttctgtcannnnnnnnnnnatattttatattgaatttgattcaaatctttatatacactatcctcgttaaagcatgtgactttgtgagttcctttat |
206 |
Q |
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||||||||| || ||| ||||||||| |||||||||| | |||||||||| ||||| | |||||||| |||||||||||||||||||| |
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| T |
28649556 |
gttctgtca-----ttttttatgtttcatattgaatatgattcaaatttatatatacactctcctcatcaaagcatgcgactttgtgagttcctttat |
28649464 |
T |
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