View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1145_high_56 (Length: 328)

Name: NF1145_high_56
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1145_high_56
NF1145_high_56
[»] chr3 (1 HSPs)
chr3 (30-321)||(32039499-32039788)


Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 30 - 321
Target Start/End: Complemental strand, 32039788 - 32039499
Alignment:
Q  30 gtatgatggacagtggaagctggcattgggattacaagatagaaggttctcacattaagctagaattcgtagaatcatagaccactaactatatcagatg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32039788 gtatgatggacagtggaagctggcattgggattacaagatagaaggttctcacattaagctagaattcgtagaatcatagaccactaactatatcagatg 32039689  T
Q  130 tctgctgcgtgaatcatggttcacagttgatgtcgtagctcacctataataatttctactaccaagatgacaggttgaacagaagttcaacctttgtgat 229  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32039688 tctgctgcgtgaatcatggttcacagttgatgtcgtagctcgcctataataatttctactaccaagatgacaggttgaacagaagttcaacctttgtgat 32039589  T
Q  230 gttaggttgttttagacttctgttgta--atgtttgtaaaatctcttccatctgttctcttcgagtttttcttttcctgtaattatattattgg 321  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||    |||||||||||||||||||||||    
T  32039588 gttaggttgttttagacttctgttgtaatatgtttgtaaaatctcttccatctgttctcttcgtgtt----ttttcctgtaattatattattgg 32039499  T

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