View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_high_57 (Length: 328)
Name: NF1145_high_57
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_57 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 75 - 328
Target Start/End: Complemental strand, 45366366 - 45366112
Alignment:
| Q |
75 |
acatcatattactctcttttatttagactatcttttatcctaaataaaagagaatattttgtcaaaaaagttcattcaaaaagtccaaaatttttatcaa |
174 |
Q |
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| T |
45366366 |
acatcatattactctcttttatttagactctcttttatcctaaataaaagagaatattttgtcaaaaaagttcattcaaaaagtccaataattttattaa |
45366267 |
T |
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| Q |
175 |
tattcnnnnnnn-gactaaactttcttttatgcttttgtttaaggtggtaaattaactcacttaaataagcatcggagaaccgaacctcagatttaaaaa |
273 |
Q |
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| T |
45366266 |
tattttttttgttgactaaactttcttttatgcttttgtttaagatagtaaattaactcacttaaattaacattggagaatcgaacctcagatttaaaaa |
45366167 |
T |
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| Q |
274 |
agactatactcgtaaatcttaagtcgatacaatcaaacgaactcaaatgtgttaa |
328 |
Q |
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| T |
45366166 |
ggactacactcataaatcttaagtcgatacaactagatgaactcaaatgtgttaa |
45366112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 45366436 - 45366396
Alignment:
| Q |
13 |
ccaccaaaacaacactgacactttcgtaactttttcactca |
53 |
Q |
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| T |
45366436 |
ccaccaaaacaacactgacactttcgtaactttttcactca |
45366396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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