View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1145_high_6 (Length: 674)

Name: NF1145_high_6
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1145_high_6
NF1145_high_6
[»] chr3 (1 HSPs)
chr3 (14-645)||(32811017-32811638)


Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 14 - 645
Target Start/End: Complemental strand, 32811638 - 32811017
Alignment:
Q  14 ctgttgcacaaatgcgtgttcatataacgatcttaacactgcctctaaaatagtgaagaaaatttcacataccaatgagatttgctactttatccgtaca 113  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32811638 ctgttgcacaaatgcttgttcatataacgatattaacactgcctctaaaatagtgaagaaaatttcacataccaatgagatttgctactttatccgtaca 32811539  T
Q  114 agcacatctttccttttgaatctaacaacgacagggcagcatgcttatcatata--gtatgtgtgttgcttaattggaggaccaaagagtagtagtagta 211  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||||||||||||||||   ||||||||||||||||||||||       
T  32811538 agcacatctttcctttgga-tctaacaacgacagggcagcatgcttatcatatatagtatgtgtgttgcttag--ggaggaccaaagagtagtagta--- 32811445  T
Q  212 ttattcaatctcaatggttaaccttgaaaatccatcatgtcacgtttatcatattcaaatctcaatgcttaattgcttagcatagtatcaaattatttta 311  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32811444 ttattcaatctcgctggttaaccttgaaaatccatcatgtcacgtttatcatattcaaatctcaatgcttaattgcttagcatagtatcaaattatttta 32811345  T
Q  312 tgtccttacttatctttatggacgtgcttgcaattatttgacactagtgtaaatgttactagctattattacttatctagtgagtagtgaccattgacac 411  Q
    |||||||   ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  32811344 tgtcctt---tatctttatggacgttcttgcaattatttgacactagtgtaaatgttactagctatta---cttatctagtgagtagtgaccattgacac 32811251  T
Q  412 ggctatttcttcgcatccaatcaagtgaaaataactcaattaaggattgaagataacatacaattaaatggaagaaaagttgatgtgtgcattgcaaaca 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32811250 ggctatttcttcgcatccaatcaagtgaaaataactcaattaaggattgaagataacatacaattaaatggaagaaaagttgatgtgtgcattgcaagca 32811151  T
Q  512 ccaaagtcaaagtgggggtatttcctacctttttgaacaataatagtaataatcttttgcttttttattggcccataatggatgtaatccgagtcagaaa 611  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32811150 ccaaagtcaaagtgggggtatttcctagctttttgaacaataatagtaataatcttttgcttttttattggcccataatggatgtaatccgagtcagaaa 32811051  T
Q  612 tgaaagcaagaaggcagtgaccttctcatgcatc 645  Q
    | ||||||||||||||||||||||||||||||||    
T  32811050 taaaagcaagaaggcagtgaccttctcatgcatc 32811017  T

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